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OPENSEQ.org
L02 - S04
UniProt: P60405 - P80373
Length: 485
Sequences: 1208
Seq/Len: 2.50
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cD 3v2dD 3v2eD 3v2fDContact Map
2j002j00D 2j01D 2j02D 2j03DContact Map
4juw4juwD 4juxDContact Map
4kix4kixC 4kiyD 4kizC 4kj0D 4kj1C 4kj2D 4kj3C 4kj4DContact Map
4kj54kj5C 4kj6D 4kj7C 4kj8D 4kj9C 4kjaD 4kjbC 4kjcDContact Map
3ohc3ohcD 3ohdD 3ohjD 3ohkDContact Map
3knh3knhD 3kniD 3knjD 3knkDContact Map
3uz63uz6G 3uz7G 3uz8D 3uz9DContact Map
3u5b3u5cEJ 3u5eA 3u5gEJ 3u5iAContact Map
3oge3ogeD 3ogyD 3oh5D 3oh7DContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
239_R 179_E 0.93 0.00
267_S 81_E 0.92 0.00
239_R 193_D 0.85 0.00
10_T 153_R 0.84 0.00
12_S 198_V 0.83 0.00
165_I 177_D 0.83 0.00
82_I 193_D 0.79 0.00
188_E 183_G 0.78 0.00
242_R 201_Q 0.75 0.00
117_V 70_I 0.73 0.00
65_I 133_V 0.73 0.00
98_V 203_V 0.73 0.00
48_R 65_R 0.72 0.00
120_G 90_G 0.72 0.00
68_K 133_V 0.70 0.00
163_A 149_A 0.70 0.00
111_L 11_L 0.69 0.00
205_V 113_S 0.68 0.00
248_S 78_L 0.68 0.00
185_V 141_R 0.68 0.00
193_V 39_P 0.67 0.00
241_P 201_Q 0.67 0.00
272_A 65_R 0.67 0.00
273_R 59_R 0.66 0.00
177_L 193_D 0.66 0.00
176_R 187_R 0.65 0.00
161_T 56_V 0.65 0.00
91_R 198_V 0.64 0.00
163_A 150_E 0.64 0.00
144_A 50_R 0.63 0.00
173_V 89_T 0.62 0.00
145_V 81_E 0.62 0.00
197_G 33_M 0.62 0.00
197_G 187_R 0.61 0.00
117_V 131_R 0.60 0.00
212_S 95_G 0.60 0.00
197_G 88_V 0.60 0.00
75_I 6_G 0.59 0.00
2_A 70_I 0.59 0.00
65_I 142_P 0.59 0.00
241_P 73_R 0.59 0.00
51_V 99_S 0.58 0.00
145_V 146_I 0.58 0.00
143_H 97_L 0.58 0.00
262_R 131_R 0.58 0.00
273_R 128_V 0.58 0.00
197_G 165_M 0.58 0.00
271_I 179_E 0.57 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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