May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L02 - L34
UniProt: P60405 - P80340
Length: 325
Sequences: 815
Seq/Len: 2.54
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2dD7 3v2fD7Contact Map
2j002j01D7 2j03D7Contact Map
4juw4juxD7Contact Map
4kix4kixC2 4kizC2 4kj1C2 4kj3C2Contact Map
4kj54kj5C2 4kj7C2 4kj9C2 4kjbC2Contact Map
2zjr2zjrA2Contact Map
4btc4btdD7Contact Map
3uyd3uyeD7 3uygD7Contact Map
4gd13r8sC2 3r8tC2Contact Map
3ohc3ohjD7 3ohkD7Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
269_F 33_R 0.94 0.00
151_K 25_P 0.86 0.00
258_K 26_G 0.82 0.00
255_K 8_N 0.80 0.00
233_H 14_K 0.79 0.00
136_I 37_K 0.76 0.00
258_K 19_R 0.76 0.00
118_V 9_R 0.74 0.00
199_A 5_W 0.73 0.00
171_D 40_W 0.72 0.00
148_E 10_R 0.70 0.00
244_R 8_N 0.69 0.00
3_V 26_G 0.67 0.00
149_P 37_K 0.67 0.00
39_K 1_M 0.66 0.00
4_K 23_R 0.66 0.00
11_P 10_R 0.65 0.00
182_L 33_R 0.65 0.00
173_V 19_R 0.65 0.00
206_L 5_W 0.65 0.00
135_F 33_R 0.65 0.00
168_R 33_R 0.64 0.00
15_F 5_W 0.64 0.00
266_S 10_R 0.63 0.00
163_A 40_W 0.63 0.00
149_P 10_R 0.63 0.00
186_H 26_G 0.63 0.00
5_K 10_R 0.63 0.00
174_I 43_T 0.62 0.00
115_Q 10_R 0.62 0.00
206_L 23_R 0.61 0.00
46_Q 25_P 0.61 0.00
239_R 33_R 0.61 0.00
242_R 10_R 0.61 0.00
261_K 13_A 0.61 0.00
119_A 31_L 0.60 0.00
3_V 40_W 0.60 0.00
254_T 33_R 0.60 0.00
54_R 32_K 0.60 0.00
156_A 36_Q 0.60 0.00
244_R 11_K 0.60 0.00
82_I 29_K 0.60 0.00
245_P 8_N 0.59 0.00
58_H 11_K 0.59 0.00
145_V 28_R 0.58 0.00
34_V 24_T 0.58 0.00
59_K 11_K 0.58 0.00
78_K 26_G 0.58 0.00
82_I 9_R 0.57 0.00
70_W 29_K 0.57 0.00
20_D 9_R 0.57 0.00
169_E 13_A 0.57 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.6274 seconds.