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OPENSEQ.org
L02 - L16
UniProt: P60405 - P60489
Length: 417
Sequences: 1211
Seq/Len: 2.92
I_Prob: 0.05
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
1vqo1vqoAHContact Map
1vq81vq8AHContact Map
1vqp1vqpAHContact Map
1vqm1vqmAHContact Map
1vql1vqlAHContact Map
1vqk1vqkAHContact Map
1yhq1yhqAHContact Map
1s721s72AHContact Map
1vq91vq9AHContact Map
1vqn1vqnAHContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
242_R 85_K 1.14 0.05
255_K 85_K 1.06 0.04
166_Q 101_R 1.00 0.03
161_T 32_Y 0.96 0.03
257_L 13_Q 0.88 0.02
158_A 89_N 0.84 0.02
156_A 122_G 0.84 0.02
258_K 23_G 0.83 0.02
248_S 85_K 0.81 0.02
225_A 11_K 0.79 0.02
148_E 13_Q 0.78 0.01
212_S 9_Y 0.78 0.01
265_P 27_V 0.76 0.01
51_V 25_D 0.75 0.01
177_L 120_I 0.73 0.01
241_P 6_R 0.72 0.01
111_L 27_V 0.71 0.01
45_N 28_A 0.71 0.01
241_P 85_K 0.70 0.01
10_T 58_F 0.70 0.01
81_A 52_V 0.69 0.01
239_R 81_V 0.69 0.01
168_R 3_M 0.69 0.01
248_S 75_T 0.68 0.01
95_L 26_Y 0.67 0.01
248_S 5_R 0.67 0.01
109_D 104_F 0.67 0.01
90_A 42_I 0.66 0.01
142_V 42_I 0.66 0.01
3_V 135_D 0.66 0.01
22_S 49_A 0.65 0.01
70_W 54_M 0.65 0.01
190_Y 132_V 0.65 0.01
116_Q 25_D 0.64 0.01
272_A 52_V 0.63 0.01
202_K 61_G 0.63 0.01
17_T 81_V 0.63 0.01
272_A 13_Q 0.63 0.01
45_N 106_V 0.63 0.01
95_L 42_I 0.63 0.01
254_T 63_K 0.62 0.01
174_I 92_G 0.62 0.01
7_K 134_R 0.62 0.01
19_A 14_R 0.61 0.01
41_G 77_K 0.61 0.01
35_K 27_V 0.61 0.01
6_F 90_V 0.61 0.01
188_E 64_I 0.61 0.01
180_G 53_A 0.61 0.01
162_S 61_G 0.60 0.01
124_P 52_V 0.60 0.01
267_S 54_M 0.60 0.01
19_A 118_L 0.60 0.01
255_K 118_L 0.60 0.01
271_I 103_M 0.59 0.01
174_I 137_Y 0.59 0.01
264_K 74_Y 0.59 0.01
145_V 92_G 0.59 0.01
217_R 113_Q 0.59 0.01
7_K 133_R 0.59 0.01
176_R 102_V 0.59 0.01
243_G 52_V 0.58 0.01
166_Q 96_V 0.58 0.01
248_S 6_R 0.58 0.01
155_L 25_D 0.58 0.01
109_D 79_L 0.58 0.01
2_A 63_K 0.58 0.01
243_G 92_G 0.58 0.01
261_K 37_L 0.57 0.01
252_W 104_F 0.57 0.01
4_K 17_L 0.57 0.01
162_S 14_R 0.57 0.01
112_Q 133_R 0.57 0.01
193_V 18_K 0.57 0.01
171_D 74_Y 0.57 0.01
203_N 81_V 0.57 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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