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OPENSEQ.org
L02 - L13
UniProt: P60405 - P60488
Length: 416
Sequences: 1491
Seq/Len: 3.59
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
1vqo1vqoAJContact Map
1vq81vq8AJContact Map
1vqp1vqpAJContact Map
1vqm1vqmAJContact Map
1vql1vqlAJContact Map
1vqk1vqkAJContact Map
1yhq1yhqAJContact Map
1s721s72AJContact Map
1vq91vq9AJContact Map
1vqn1vqnAJContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
203_N 129_P 0.87 0.00
75_I 76_S 0.76 0.00
98_V 137_K 0.72 0.00
140_T 120_L 0.72 0.00
48_R 114_R 0.71 0.00
155_L 52_V 0.70 0.00
269_F 5_V 0.70 0.00
7_K 107_L 0.68 0.00
54_R 139_E 0.68 0.00
184_K 30_I 0.67 0.00
248_S 38_H 0.67 0.00
106_I 55_V 0.66 0.00
225_A 78_Y 0.65 0.00
252_W 42_W 0.65 0.00
140_T 60_I 0.64 0.00
2_A 35_R 0.64 0.00
185_V 27_A 0.63 0.00
103_R 21_K 0.62 0.00
94_L 36_G 0.62 0.00
275_K 6_P 0.62 0.00
140_T 34_L 0.62 0.00
267_S 139_E 0.61 0.00
60_R 115_R 0.61 0.00
89_S 85_I 0.61 0.00
257_L 42_W 0.61 0.00
12_S 3_T 0.61 0.00
254_T 73_T 0.60 0.00
79_V 27_A 0.60 0.00
239_R 2_K 0.60 0.00
11_P 52_V 0.60 0.00
6_F 140_V 0.59 0.00
263_R 98_V 0.59 0.00
269_F 15_L 0.59 0.00
12_S 84_K 0.58 0.00
239_R 7_K 0.58 0.00
91_R 129_P 0.58 0.00
45_N 46_V 0.58 0.00
272_A 26_L 0.58 0.00
168_R 23_L 0.58 0.00
138_V 45_N 0.57 0.00
49_I 83_K 0.57 0.00
54_R 58_D 0.57 0.00
134_R 63_T 0.57 0.00
186_H 103_V 0.57 0.00
113_V 42_W 0.56 0.00
7_K 101_H 0.56 0.00
61_L 140_V 0.56 0.00
133_L 93_T 0.56 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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