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OPENSEQ.org
YGBI - YGBM
UniProt: P52598 - Q46891
Length: 513
Sequences: 417
Seq/Len: 0.82
I_Prob: 0.00
YGBI - Uncharacterized HTH-type transcriptional regulator YgbI
Paralog alert: 0.83 [within 20: 0.11] - ratio of genomes with paralogs
Cluster includes: AGAR DEOR FUCR GATR GLPR SGCR SRLR ULAR YCIT YDJF YGBI YIHW 		YGBM - Putative hydroxypyruvate isomerase YgbM
Paralog alert: 0.70 [within 20: 0.18] - ratio of genomes with paralogs
Cluster includes: END4 FRLC HYI SGBU ULAE YCJR YGBM
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
97_Y 126_I 1.19 0.00
98_L 32_V 1.15 0.00
84_K 226_R 1.10 0.00
92_P 53_H 1.07 0.00
93_G 115_A 1.02 0.00
40_L 200_Y 0.98 0.00
246_D 230_E 0.93 0.00
119_V 197_A 0.93 0.00
16_E 45_I 0.91 0.00
18_G 154_L 0.91 0.00
46_Q 92_E 0.90 0.00
27_D 47_K 0.89 0.00
117_L 53_H 0.88 0.00
16_E 124_D 0.87 0.00
228_I 51_Q 0.87 0.00
220_L 226_R 0.85 0.00
111_L 179_T 0.84 0.00
87_A 77_P 0.84 0.00
10_I 130_A 0.83 0.00
164_L 57_A 0.83 0.00
171_I 91_L 0.82 0.00
171_I 127_R 0.82 0.00
138_I 227_L 0.82 0.00
111_L 184_K 0.81 0.00
236_E 106_A 0.81 0.00
204_L 32_V 0.81 0.00
90_V 79_R 0.81 0.00
28_R 81_H 0.80 0.00
111_L 31_A 0.80 0.00
209_T 175_I 0.80 0.00
138_I 203_V 0.79 0.00
108_A 85_A 0.79 0.00
20_V 163_A 0.79 0.00
203_V 166_E 0.79 0.00
182_S 237_I 0.79 0.00
96_I 116_E 0.78 0.00
222_L 177_L 0.78 0.00
103_T 228_F 0.77 0.00
182_S 219_I 0.77 0.00
194_A 16_P 0.77 0.00
220_L 124_D 0.77 0.00
209_T 94_A 0.76 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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