May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

YGBI - YGBL
UniProt: P52598 - Q46890
Length: 467
Sequences: 441
Seq/Len: 0.96
I_Prob: 0.00

YGBI - Uncharacterized HTH-type transcriptional regulator YgbI
Paralog alert: 0.83 [within 20: 0.11] - ratio of genomes with paralogs
Cluster includes: AGAR DEOR FUCR GATR GLPR SGCR SRLR ULAR YCIT YDJF YGBI YIHW
YGBL - Putative aldolase class 2 protein YgbL
Paralog alert: 0.64 [within 20: 0.04] - ratio of genomes with paralogs
Cluster includes: ARAD FUCA RHAD SGBE ULAF YGBL
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
205_V 55_N 1.11 0.00
25_L 188_A 1.06 0.00
18_G 38_L 1.00 0.00
187_D 173_S 0.90 0.00
102_T 162_L 0.87 0.00
98_L 108_S 0.84 0.00
119_V 59_Q 0.84 0.00
117_L 46_A 0.84 0.00
95_C 148_Q 0.82 0.00
139_I 96_V 0.82 0.00
119_V 111_Q 0.82 0.00
203_V 169_V 0.82 0.00
16_E 203_T 0.81 0.00
52_V 108_S 0.81 0.00
145_V 56_L 0.81 0.00
10_I 38_L 0.80 0.00
109_Q 75_K 0.80 0.00
45_Q 91_P 0.79 0.00
203_V 106_A 0.78 0.00
109_Q 89_N 0.78 0.00
185_A 137_P 0.77 0.00
141_T 169_V 0.76 0.00
147_R 148_Q 0.76 0.00
86_A 59_Q 0.76 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.6564 seconds.