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OPENSEQ.org

PTPD - YADI
UniProt: P42911 - P36881
Length: 409
Sequences: 623
Seq/Len: 1.59
I_Prob: 0.00

PTPD - N-acetylgalactosamine permease IID component
Paralog alert: 0.75 [within 20: 0.16] - ratio of genomes with paralogs
Cluster includes: PTND PTPD
YADI - Putative phosphotransferase enzyme IIA component YadI
Paralog alert: 0.66 [within 20: 0.03] - ratio of genomes with paralogs
Cluster includes: YADI
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
74_L 98_E 1.06 0.00
29_M 96_L 1.04 0.00
139_A 5_V 1.03 0.00
122_C 48_M 1.01 0.00
116_P 72_P 1.00 0.00
223_I 56_D 0.99 0.00
246_L 16_I 0.97 0.00
246_L 108_T 0.96 0.00
124_S 43_M 0.93 0.00
136_L 80_S 0.92 0.00
253_L 68_A 0.90 0.00
222_N 123_E 0.90 0.00
206_T 71_P 0.89 0.00
93_G 63_F 0.86 0.00
243_P 5_V 0.85 0.00
130_N 124_V 0.85 0.00
108_A 39_L 0.85 0.00
262_I 50_D 0.85 0.00
24_F 35_F 0.84 0.00
249_V 6_I 0.83 0.00
35_T 90_S 0.83 0.00
241_A 96_L 0.83 0.00
180_L 26_A 0.83 0.00
80_S 104_R 0.82 0.00
25_N 91_G 0.82 0.00
81_M 45_S 0.81 0.00
134_P 75_V 0.81 0.00
216_F 125_S 0.80 0.00
6_S 61_V 0.80 0.00
45_I 62_I 0.79 0.00
28_R 23_K 0.78 0.00
180_L 98_E 0.78 0.00
105_I 63_F 0.78 0.00
55_A 33_V 0.78 0.00
52_G 53_H 0.77 0.00
89_D 105_E 0.76 0.00
256_V 5_V 0.76 0.00
38_M 63_F 0.75 0.00
216_F 52_L 0.75 0.00
68_P 22_K 0.75 0.00
187_G 5_V 0.75 0.00
130_N 122_P 0.75 0.00
54_S 31_R 0.74 0.00
184_V 81_H 0.74 0.00
189_I 73_Y 0.74 0.00
55_A 67_I 0.74 0.00
163_I 67_I 0.73 0.00
9_D 17_L 0.72 0.00
65_N 70_A 0.72 0.00
120_G 65_T 0.72 0.00
249_V 97_I 0.72 0.00
94_L 5_V 0.71 0.00
143_L 59_E 0.71 0.00
262_I 85_R 0.71 0.00
252_V 89_I 0.71 0.00
58_K 6_I 0.71 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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