May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

EAMB - RPOE
UniProt: P38101 - P0AGB6
Length: 386
Sequences: 343
Seq/Len: 0.92
I_Prob: 0.00

EAMB - Cysteine/O-acetylserine efflux protein
Paralog alert: 0.75 [within 20: 0.24] - ratio of genomes with paralogs
Cluster includes: EAMB LEUE RHTB RHTC YAHN
RPOE - RNA polymerase sigma-E factor
Paralog alert: 0.65 [within 20: 0.13] - ratio of genomes with paralogs
Cluster includes: FECI RPOE
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
175_G 88_A 1.09 0.00
65_A 136_E 1.08 0.00
7_S 29_Y 1.02 0.00
86_L 151_L 0.97 0.00
51_L 136_E 0.90 0.00
151_M 70_F 0.90 0.00
48_L 57_A 0.88 0.00
48_L 131_V 0.86 0.00
161_A 51_Q 0.85 0.00
144_G 54_F 0.84 0.00
81_A 44_G 0.83 0.00
57_C 47_P 0.82 0.00
15_I 118_P 0.82 0.00
1_M 47_P 0.82 0.00
48_L 43_S 0.81 0.00
133_L 153_G 0.79 0.00
88_W 103_A 0.79 0.00
176_R 84_N 0.79 0.00
65_A 144_M 0.79 0.00
86_L 57_A 0.77 0.00
190_A 126_E 0.76 0.00
181_V 158_E 0.75 0.00
71_A 170_V 0.75 0.00
65_A 66_G 0.74 0.00
183_A 151_L 0.74 0.00
61_S 153_G 0.74 0.00
16_T 147_T 0.74 0.00
122_L 82_A 0.74 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.1104 seconds.