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OPENSEQ.org

CSIR - YGAV
UniProt: P37338 - P77295
Length: 319
Sequences: 446
Seq/Len: 1.50
I_Prob: 0.00

CSIR - HTH-type transcriptional repressor CsiR
Paralog alert: 0.80 [within 20: 0.20] - ratio of genomes with paralogs
Cluster includes: CSIR DGOR EXUR FADR GLCC LLDR MCBR NANR PDHR UXUR YDFH YIEP
YGAV - Probable HTH-type transcriptional regulator YgaV
Paralog alert: 0.75 [within 20: 0.14] - ratio of genomes with paralogs
Cluster includes: ARSR YGAV
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
193_R 68_I 0.98 0.00
193_R 67_L 0.93 0.00
56_V 62_M 0.91 0.00
98_D 43_E 0.89 0.00
43_L 27_L 0.88 0.00
109_H 89_I 0.84 0.00
177_E 69_D 0.82 0.00
194_D 88_A 0.81 0.00
105_L 22_S 0.80 0.00
139_V 84_E 0.79 0.00
12_L 73_D 0.78 0.00
206_L 53_S 0.77 0.00
198_A 47_I 0.76 0.00
104_V 77_I 0.76 0.00
129_L 89_I 0.75 0.00
56_V 24_P 0.75 0.00
27_L 59_L 0.74 0.00
160_R 50_L 0.73 0.00
31_L 68_I 0.72 0.00
187_T 67_L 0.72 0.00
183_H 81_I 0.72 0.00
138_I 89_I 0.71 0.00
82_A 44_L 0.71 0.00
25_E 35_G 0.70 0.00
190_V 82_K 0.70 0.00
20_N 54_A 0.70 0.00
66_V 67_L 0.68 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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