May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L33 - L35
UniProt: P35871 - Q5SKU1
Length: 119
Sequences: 1030
Seq/Len: 8.80
I_Prob: 0.07
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2d68 3v2f68Contact Map
2j002j0168 2j0368Contact Map
4juw4jux68Contact Map
4kix4kix13 4kiz13 4kj113 4kj313Contact Map
4kj54kj513 4kj713 4kj913 4kjb13Contact Map
2zjr2zjr13Contact Map
4btc4btd68Contact Map
3uyd3uye68 3uyg68Contact Map
3v223v2368 3v2568Contact Map
4gd13r8s13 3r8t13Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
8_K 34_W 1.05 0.07
54_I 17_T 0.83 0.03
53_K 4_M 0.80 0.03
19_R 38_G 0.74 0.02
24_E 34_W 0.74 0.02
33_K 22_V 0.74 0.02
37_R 9_G 0.71 0.02
46_H 38_G 0.69 0.02
28_R 33_N 0.68 0.02
39_Y 52_K 0.67 0.02
53_K 47_K 0.67 0.02
12_E 64_Y 0.66 0.02
36_L 9_G 0.62 0.01
22_A 34_W 0.62 0.01
32_N 27_T 0.60 0.01
19_R 10_A 0.60 0.01
34_L 24_A 0.60 0.01
12_E 19_S 0.58 0.01
49_H 26_K 0.58 0.01
49_H 38_G 0.56 0.01
48_V 26_K 0.54 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.1273 seconds.