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OPENSEQ.org
L33 - S16
UniProt: P35871 - Q5SJH3
Length: 142
Sequences: 1176
Seq/Len: 8.46
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cP 3v2d6 3v2eP 3v2f6Contact Map
2j002j00P 2j016 2j02P 2j036Contact Map
4juw4juwP 4jux6Contact Map
4kix4kix1 4kiyP 4kiz1 4kj0P 4kj11 4kj2P 4kj31 4kj4PContact Map
4kj54kj51 4kj6P 4kj71 4kj8P 4kj91 4kjaP 4kjb1 4kjcPContact Map
3ohc3ohcP 3ohdP 3ohj6 3ohk6Contact Map
3knh3knhP 3kni6 3knjP 3knk6Contact Map
3uz63uz6S 3uz7S 3uz86 3uz96Contact Map
3oge3ogeP 3ogyP 3oh56 3oh76Contact Map
3uyd3uydS 3uye6 3uyfS 3uyg6Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
31_P 65_Q 0.94 0.01
54_I 27_K 0.70 0.01
52_V 69_T 0.69 0.01
46_H 34_E 0.68 0.01
28_R 53_V 0.65 0.01
39_Y 38_Y 0.64 0.01
29_N 3_K 0.63 0.01
7_I 33_I 0.62 0.01
8_K 33_I 0.61 0.01
6_R 1_M 0.61 0.01
26_N 71_R 0.60 0.01
11_L 24_A 0.60 0.01
40_C 18_R 0.55 0.00
22_A 41_P 0.55 0.00
36_L 80_F 0.53 0.00
12_E 39_Y 0.53 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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