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OPENSEQ.org
L33 - S05
UniProt: P35871 - Q5SHQ5
Length: 216
Sequences: 905
Seq/Len: 4.29
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cE 3v2d6 3v2eE 3v2f6Contact Map
2j002j00E 2j016 2j02E 2j036Contact Map
4juw4juwE 4jux6Contact Map
4kix4kix1 4kiyE 4kiz1 4kj0E 4kj11 4kj2E 4kj31 4kj4EContact Map
4kj54kj51 4kj6E 4kj71 4kj8E 4kj91 4kjaE 4kjb1 4kjcEContact Map
3uyd3uydH 3uye6 3uyfH 3uyg6Contact Map
4gd13r8s1 3r8t1 4gd1E 4gd2EContact Map
3ohc3ohcE 3ohdE 3ohj6 3ohk6Contact Map
3knh3knhE 3kni6 3knjE 3knk6Contact Map
3f1e3f1eE 3f1f6 3f1gE 3f1h6Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
46_H 127_N 0.95 0.01
54_I 48_A 0.92 0.01
26_N 63_R 0.91 0.01
22_A 119_L 0.88 0.01
8_K 27_R 0.85 0.01
26_N 14_R 0.82 0.01
33_K 61_Y 0.81 0.01
37_R 38_Q 0.81 0.01
45_K 150_R 0.79 0.01
8_K 129_I 0.79 0.01
28_R 7_E 0.79 0.01
25_K 130_N 0.77 0.01
34_L 146_A 0.75 0.01
27_K 91_L 0.74 0.01
33_K 87_S 0.74 0.01
31_P 37_R 0.72 0.01
53_K 66_M 0.69 0.01
31_P 139_L 0.67 0.00
50_R 144_T 0.66 0.00
52_V 26_F 0.66 0.00
7_I 100_V 0.66 0.00
54_I 10_M 0.66 0.00
18_R 138_A 0.65 0.00
34_L 72_Q 0.62 0.00
9_L 71_L 0.62 0.00
39_Y 49_P 0.62 0.00
27_K 154_G 0.62 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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