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OPENSEQ.org
L33 - S14
UniProt: P35871 - Q5SHQ1
Length: 115
Sequences: 1044
Seq/Len: 9.16
I_Prob: 0.04
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cN 3v2d6 3v2eN 3v2f6Contact Map
2j002j00N 2j016 2j02N 2j036Contact Map
4juw4juwN 4jux6Contact Map
3ohc3ohcN 3ohdN 3ohj6 3ohk6Contact Map
3knh3knhN 3kni6 3knjN 3knk6Contact Map
3uz63uz6Q 3uz7Q 3uz86 3uz96Contact Map
3oge3ogeN 3ogyN 3oh56 3oh76Contact Map
3uyd3uydQ 3uye6 3uyfQ 3uyg6Contact Map
3f1e3f1eN 3f1f6 3f1gN 3f1h6Contact Map
3ohy3ohyN 3ohz6 3oi0N 3oi16Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
50_R 41_R 1.01 0.04
33_K 49_H 0.82 0.02
49_H 40_C 0.71 0.01
20_N 27_C 0.69 0.01
53_K 24_C 0.68 0.01
5_V 33_V 0.68 0.01
52_V 36_F 0.66 0.01
7_I 53_L 0.65 0.01
19_R 40_C 0.64 0.01
53_K 27_C 0.63 0.01
26_N 7_I 0.59 0.01
33_K 46_E 0.58 0.01
44_R 50_K 0.55 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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