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OPENSEQ.org
L33 - S04
UniProt: P35871 - P80373
Length: 263
Sequences: 1140
Seq/Len: 4.38
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cD 3v2d6 3v2eD 3v2f6Contact Map
2j002j00D 2j016 2j02D 2j036Contact Map
4juw4juwD 4jux6Contact Map
4kix4kix1 4kiyD 4kiz1 4kj0D 4kj11 4kj2D 4kj31 4kj4DContact Map
4kj54kj51 4kj6D 4kj71 4kj8D 4kj91 4kjaD 4kjb1 4kjcDContact Map
3uyd3uydG 3uye6 3uyfG 3uyg6Contact Map
4gd13r8s1 3r8t1 4gd1D 4gd2DContact Map
3ohc3ohcD 3ohdD 3ohj6 3ohk6Contact Map
3knh3knhD 3kni6 3knjD 3knk6Contact Map
3f1e3f1eD 3f1f6 3f1gD 3f1h6Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
9_L 171_G 0.78 0.00
44_R 84_K 0.74 0.00
24_E 161_N 0.72 0.00
29_N 193_D 0.72 0.00
29_N 147_A 0.68 0.00
32_N 108_L 0.66 0.00
45_K 141_R 0.63 0.00
31_P 179_E 0.62 0.00
48_V 73_R 0.61 0.00
22_A 11_L 0.61 0.00
49_H 181_M 0.61 0.00
37_R 77_N 0.61 0.00
9_L 110_F 0.60 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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