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OPENSEQ.org
L33 - S02
UniProt: P35871 - P80371
Length: 310
Sequences: 1036
Seq/Len: 3.67
I_Prob: 0.08
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cB 3v2d6 3v2eB 3v2f6Contact Map
2j002j00B 2j016 2j02B 2j036Contact Map
4juw4juwB 4jux6Contact Map
4kix4kix1 4kiyB 4kiz1 4kj0B 4kj11 4kj2B 4kj31 4kj4BContact Map
4kj54kj51 4kj6B 4kj71 4kj8B 4kj91 4kjaB 4kjb1 4kjcBContact Map
3uyd3uydE 3uye6 3uyfE 3uyg6Contact Map
4gd13r8s1 3r8t1 4gd1B 4gd2BContact Map
3knh3knhB 3kni6 3knjB 3knk6Contact Map
3ohc3ohcB 3ohdB 3ohj6 3ohk6Contact Map
3ohy3ohyB 3ohz6 3oi0B 3oi16Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
33_K 34_A 1.13 0.08
34_L 31_Y 1.00 0.05
36_L 31_Y 0.94 0.04
53_K 185_I 0.89 0.04
26_N 33_Y 0.88 0.04
46_H 203_G 0.83 0.03
39_Y 78_Q 0.80 0.03
31_P 43_D 0.80 0.03
22_A 109_S 0.78 0.03
39_Y 43_D 0.76 0.02
39_Y 60_D 0.74 0.02
43_C 118_L 0.72 0.02
30_T 143_E 0.72 0.02
39_Y 181_F 0.72 0.02
41_P 67_T 0.71 0.02
22_A 140_H 0.70 0.02
12_E 59_E 0.69 0.02
24_E 174_V 0.69 0.02
33_K 22_K 0.67 0.02
26_N 140_H 0.67 0.02
33_K 197_V 0.66 0.02
26_N 173_A 0.66 0.02
35_E 5_I 0.65 0.01
17_K 144_R 0.64 0.01
27_K 27_K 0.64 0.01
45_K 88_A 0.64 0.01
44_R 52_E 0.63 0.01
22_A 88_A 0.63 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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