May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

PANC - PAND
UniProt: P31663 - P0A790
Length: 409
Sequences: 533
Seq/Len: 1.32
I_Prob: 0.00

PANC - Pantothenate synthetase
Paralog alert: 0.02 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: PANC
PAND - Aspartate 1-decarboxylase
Paralog alert: 0.02 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: PAND
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
169_D 93_M 1.08 0.00
153_F 23_E 1.00 0.00
156_L 41_N 0.99 0.00
17_L 41_N 0.96 0.00
227_T 100_T 0.94 0.00
208_L 36_A 0.92 0.00
32_N 27_A 0.92 0.00
150_E 10_L 0.91 0.00
172_I 40_E 0.89 0.00
60_M 26_C 0.86 0.00
207_V 4_T 0.85 0.00
53_V 41_N 0.85 0.00
87_V 114_M 0.85 0.00
165_D 37_G 0.84 0.00
177_I 88_A 0.84 0.00
94_S 102_R 0.84 0.00
50_V 41_N 0.83 0.00
165_D 112_N 0.83 0.00
90_V 90_F 0.82 0.00
18_R 102_R 0.82 0.00
140_L 107_Y 0.80 0.00
23_R 55_F 0.80 0.00
119_E 10_L 0.79 0.00
272_A 108_F 0.79 0.00
235_E 99_R 0.78 0.00
162_M 93_M 0.78 0.00
11_R 91_V 0.77 0.00
96_K 111_D 0.77 0.00
164_A 115_K 0.77 0.00
233_L 106_A 0.76 0.00
131_S 71_V 0.76 0.00
150_E 46_I 0.76 0.00
86_K 113_E 0.76 0.00
280_V 105_V 0.76 0.00
202_P 48_N 0.76 0.00
111_V 108_F 0.76 0.00
124_P 87_I 0.75 0.00
140_L 7_Q 0.75 0.00
33_L 46_I 0.74 0.00
208_L 59_A 0.73 0.00
262_V 70_S 0.73 0.00
133_I 49_V 0.73 0.00
4_I 115_K 0.73 0.00
253_E 101_W 0.73 0.00
225_I 12_R 0.73 0.00
168_F 113_E 0.72 0.00
270_G 108_F 0.72 0.00
112_P 23_E 0.72 0.00
251_L 10_L 0.72 0.00
177_I 89_S 0.71 0.00
195_A 46_I 0.71 0.00
25_A 119_K 0.71 0.00
164_A 110_G 0.71 0.00
211_I 23_E 0.70 0.00
246_R 107_Y 0.70 0.00
17_L 64_R 0.70 0.00
60_M 2_I 0.70 0.00
6_T 38_I 0.70 0.00
75_L 85_V 0.70 0.00
74_T 59_A 0.70 0.00
6_T 117_T 0.70 0.00
113_G 37_G 0.70 0.00
80_E 28_I 0.69 0.00
139_N 112_N 0.69 0.00
69_A 38_I 0.69 0.00
89_L 41_N 0.69 0.00
267_A 79_A 0.69 0.00
35_D 78_C 0.69 0.00
170_I 49_V 0.69 0.00
44_A 55_F 0.69 0.00
269_L 40_E 0.68 0.00
110_D 10_L 0.68 0.00
234_N 94_P 0.68 0.00
182_D 65_G 0.68 0.00
45_K 81_V 0.68 0.00
197_Q 77_H 0.67 0.00
199_K 66_S 0.67 0.00
211_I 17_H 0.66 0.00
89_L 92_T 0.66 0.00
28_P 42_E 0.66 0.00
19_M 81_V 0.66 0.00
68_L 46_I 0.66 0.00
39_K 14_K 0.66 0.00
170_I 80_S 0.66 0.00
9_L 14_K 0.66 0.00
42_D 34_D 0.66 0.00
159_I 4_T 0.65 0.00
200_I 3_R 0.65 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 2.5184 seconds.