May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

THIB - THIP
UniProt: P31550 - P31549
Length: 863
Sequences: 1427
Seq/Len: 1.75
I_Prob: 0.21

THIB - Thiamine-binding periplasmic protein
Paralog alert: 0.87 [within 20: 0.21] - ratio of genomes with paralogs
Cluster includes: CYSP MALE MODA POTD POTF SUBI THIB UGPB YCJN YDCS YNJB
THIP - Thiamine transport system permease protein ThiP
Paralog alert: 0.41 [within 20: 0.02] - ratio of genomes with paralogs
Cluster includes: THIP YNJC
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
53_K 487_D 1.46 0.21
208_E 137_Y 1.06 0.07
212_V 502_Y 1.04 0.06
153_V 141_G 1.02 0.06
65_N 474_I 0.99 0.05
302_T 187_V 0.99 0.05
149_Q 353_L 0.98 0.05
146_E 462_L 0.98 0.05
24_V 73_P 0.97 0.05
257_E 91_A 0.96 0.05
22_L 298_A 0.96 0.05
96_F 466_L 0.95 0.04
205_L 354_W 0.94 0.04
81_G 210_S 0.93 0.04
265_F 410_F 0.93 0.04
152_R 330_A 0.92 0.04
116_T 59_S 0.92 0.04
149_Q 171_Q 0.92 0.04
287_V 523_T 0.91 0.04
69_M 156_R 0.90 0.04
252_A 453_V 0.90 0.04
50_C 428_M 0.89 0.04
265_F 172_L 0.89 0.04
24_V 275_L 0.89 0.03
47_D 181_W 0.89 0.03
132_N 368_G 0.88 0.03
319_S 45_A 0.88 0.03
98_K 328_W 0.87 0.03
316_A 64_F 0.86 0.03
255_Q 527_K 0.86 0.03
143_E 300_L 0.86 0.03
96_F 106_V 0.85 0.03
263_L 115_Y 0.85 0.03
22_L 144_L 0.85 0.03
119_P 225_T 0.83 0.03
124_Y 231_Y 0.83 0.03
139_Q 196_I 0.83 0.03
319_S 294_L 0.83 0.03
67_L 158_L 0.83 0.03
51_E 447_W 0.83 0.03
123_G 416_A 0.83 0.03
210_D 71_V 0.82 0.03
22_L 465_A 0.82 0.03
50_C 189_W 0.82 0.03
22_L 339_L 0.82 0.03
276_P 334_S 0.82 0.03
257_E 260_L 0.82 0.03
268_S 406_G 0.81 0.03
181_Q 147_V 0.81 0.03
245_E 105_L 0.81 0.03
116_T 458_L 0.80 0.03
308_A 307_L 0.80 0.02
312_A 44_V 0.80 0.02
47_D 91_A 0.80 0.02
178_D 524_V 0.80 0.02
67_L 60_F 0.80 0.02
153_V 355_S 0.80 0.02
63_L 66_S 0.80 0.02
211_L 430_D 0.80 0.02
68_R 326_V 0.79 0.02
148_D 293_V 0.79 0.02
28_D 478_G 0.79 0.02
27_Y 155_S 0.79 0.02
67_L 175_Q 0.78 0.02
81_G 116_G 0.78 0.02
298_K 520_L 0.78 0.02
52_L 64_F 0.78 0.02
178_D 310_I 0.78 0.02
67_L 231_Y 0.78 0.02
50_C 337_I 0.78 0.02
51_E 50_S 0.78 0.02
240_H 142_I 0.78 0.02
186_L 299_L 0.78 0.02
123_G 105_L 0.77 0.02
263_L 309_V 0.77 0.02
25_Y 391_F 0.77 0.02
140_S 173_A 0.77 0.02
250_T 147_V 0.77 0.02
167_L 206_L 0.77 0.02
199_E 439_C 0.77 0.02
256_P 257_L 0.77 0.02
66_R 108_V 0.77 0.02
148_D 72_I 0.76 0.02
214_S 333_T 0.76 0.02
313_Q 410_F 0.76 0.02
78_V 144_L 0.76 0.02
240_H 155_S 0.76 0.02
119_P 416_A 0.76 0.02
196_G 303_L 0.76 0.02
185_K 252_V 0.76 0.02
24_V 64_F 0.76 0.02
110_G 524_V 0.76 0.02
184_Q 64_F 0.76 0.02
290_P 331_L 0.76 0.02
283_P 305_P 0.76 0.02
212_V 74_A 0.75 0.02
49_N 180_S 0.75 0.02
210_D 378_I 0.75 0.02
314_R 478_G 0.75 0.02
240_H 334_S 0.75 0.02
181_Q 517_L 0.75 0.02
224_L 196_I 0.74 0.02
92_K 72_I 0.74 0.02
40_V 140_Q 0.74 0.02
273_N 340_A 0.74 0.02
170_W 439_C 0.74 0.02
170_W 338_A 0.74 0.02
166_G 66_S 0.73 0.02
257_E 371_L 0.73 0.02
96_F 227_E 0.73 0.02
190_T 219_G 0.73 0.02
267_V 85_R 0.73 0.02
298_K 524_V 0.73 0.02
253_S 147_V 0.73 0.02
65_N 355_S 0.73 0.02
67_L 213_T 0.73 0.02
63_L 196_I 0.73 0.02
81_G 111_I 0.72 0.02
188_K 54_H 0.72 0.02
245_E 150_N 0.72 0.02
204_F 383_G 0.72 0.02
125_F 478_G 0.72 0.02
171_M 382_P 0.72 0.02
213_L 70_S 0.72 0.02
92_K 329_Q 0.72 0.02
321_W 206_L 0.72 0.02
51_E 513_I 0.72 0.02
140_S 247_A 0.72 0.02
261_K 241_A 0.72 0.02
208_E 116_G 0.72 0.02
177_D 47_W 0.72 0.02
134_L 332_W 0.71 0.02
48_C 491_L 0.71 0.02
181_Q 286_H 0.71 0.02
178_D 339_L 0.71 0.02
107_N 437_M 0.71 0.02
73_N 124_L 0.71 0.02
252_A 356_S 0.71 0.02
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 2.1455 seconds.