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OPENSEQ.org

POTF - YBJK
UniProt: P31133 - P75811
Length: 548
Sequences: 843
Seq/Len: 1.65
I_Prob: 0.00

POTF - Putrescine-binding periplasmic protein
Paralog alert: 0.78 [within 20: 0.12] - ratio of genomes with paralogs
Cluster includes: CYSP MALE MODA POTD POTF SUBI THIB UGPB YCJN YDCS YNJB
YBJK - Uncharacterized HTH-type transcriptional regulator YbjK
Paralog alert: 0.76 [within 20: 0.18] - ratio of genomes with paralogs
Cluster includes: ACRR BDCR BETI COMR ENVR NEMR RUTR SLMA UIDR YBIH YBJK YJDC
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
298_Y 58_E 1.10 0.00
101_L 45_M 0.92 0.00
303_D 65_E 0.84 0.00
299_L 85_C 0.83 0.00
55_I 17_T 0.83 0.00
43_P 51_G 0.83 0.00
163_I 27_H 0.81 0.00
32_L 33_K 0.80 0.00
94_T 140_P 0.79 0.00
55_I 24_Y 0.77 0.00
44_D 139_E 0.77 0.00
81_L 40_V 0.75 0.00
95_A 16_A 0.75 0.00
303_D 128_Q 0.74 0.00
95_A 73_A 0.74 0.00
204_D 31_H 0.73 0.00
317_A 105_L 0.72 0.00
307_H 31_H 0.72 0.00
32_L 75_F 0.70 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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