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OPENSEQ.org

THIE - YGDL
UniProt: P30137 - Q46927
Length: 479
Sequences: 279
Seq/Len: 0.67
I_Prob: 0.00

THIE - Thiamine-phosphate synthase
Paralog alert: 0.31 [within 20: 0.06] - ratio of genomes with paralogs
Cluster includes: THIE
YGDL - Uncharacterized protein YgdL
Paralog alert: 0.63 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: MOEB THIF YGDL
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
107_V 81_V 1.41 0.00
172_A 126_I 1.34 0.00
38_L 28_F 1.22 0.00
38_L 201_V 1.19 0.00
34_R 68_T 1.16 0.00
188_A 57_I 1.16 0.00
194_D 65_V 1.13 0.00
184_A 93_I 1.12 0.00
202_L 215_S 1.11 0.00
143_P 245_T 1.10 0.00
34_R 21_G 1.10 0.00
154_E 86_A 1.09 0.00
132_F 203_C 1.05 0.00
167_I 42_G 1.03 0.00
169_L 36_V 1.03 0.00
99_R 152_T 1.00 0.00
89_D 206_S 0.99 0.00
15_L 71_N 0.99 0.00
194_D 23_K 0.98 0.00
105_L 20_Y 0.97 0.00
92_A 51_R 0.94 0.00
59_G 10_R 0.94 0.00
131_V 22_E 0.93 0.00
116_D 22_E 0.93 0.00
126_I 98_P 0.93 0.00
130_H 202_D 0.93 0.00
62_Y 59_L 0.91 0.00
33_V 124_Y 0.91 0.00
162_V 125_V 0.90 0.00
132_F 136_A 0.90 0.00
63_N 98_P 0.89 0.00
130_H 245_T 0.89 0.00
43_R 240_A 0.88 0.00
117_V 21_G 0.88 0.00
114_E 243_M 0.88 0.00
193_A 83_L 0.88 0.00
166_G 13_F 0.88 0.00
201_Q 90_A 0.88 0.00
15_L 135_K 0.87 0.00
15_L 54_I 0.86 0.00
21_S 114_V 0.86 0.00
141_S 254_S 0.86 0.00
178_T 14_G 0.86 0.00
50_A 79_D 0.86 0.00
193_A 94_R 0.85 0.00
172_A 124_Y 0.85 0.00
117_V 95_Q 0.85 0.00
99_R 248_F 0.84 0.00
98_I 27_L 0.84 0.00
154_E 81_V 0.84 0.00
130_H 203_C 0.84 0.00
79_Q 112_D 0.84 0.00
23_Q 71_N 0.84 0.00
153_V 18_R 0.84 0.00
58_L 12_R 0.84 0.00
57_A 86_A 0.84 0.00
110_H 24_A 0.84 0.00
167_I 139_I 0.84 0.00
193_A 106_D 0.83 0.00
149_L 128_A 0.83 0.00
203_L 44_W 0.83 0.00
130_H 200_G 0.83 0.00
44_R 23_K 0.83 0.00
119_L 209_A 0.83 0.00
116_D 202_D 0.82 0.00
158_D 34_C 0.82 0.00
141_S 242_T 0.81 0.00
171_R 262_A 0.81 0.00
112_D 124_Y 0.81 0.00
186_V 151_T 0.81 0.00
181_G 44_W 0.81 0.00
58_L 128_A 0.81 0.00
96_N 32_H 0.81 0.00
27_R 256_A 0.80 0.00
100_A 84_A 0.80 0.00
146_L 207_T 0.80 0.00
202_L 135_K 0.80 0.00
96_N 113_N 0.80 0.00
63_N 102_V 0.80 0.00
82_G 42_G 0.80 0.00
163_A 139_I 0.79 0.00
194_D 110_T 0.79 0.00
172_A 88_V 0.79 0.00
47_E 32_H 0.78 0.00
132_F 200_G 0.78 0.00
185_V 129_I 0.78 0.00
57_A 102_V 0.78 0.00
108_S 243_M 0.78 0.00
184_A 42_G 0.78 0.00
57_A 109_V 0.77 0.00
114_E 200_G 0.77 0.00
68_I 95_Q 0.77 0.00
15_L 97_N 0.77 0.00
36_L 146_K 0.77 0.00
196_R 82_G 0.77 0.00
189_I 96_I 0.77 0.00
187_S 74_I 0.77 0.00
15_L 62_M 0.77 0.00
155_R 125_V 0.76 0.00
202_L 44_W 0.76 0.00
171_R 141_Y 0.76 0.00
130_H 46_A 0.76 0.00
200_A 91_E 0.76 0.00
111_D 153_G 0.76 0.00
159_Y 109_V 0.76 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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