May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

MENC - MENE
UniProt: P29208 - P37353
Length: 771
Sequences: 716
Seq/Len: 0.97
I_Prob: 0.00

MENC - o-succinylbenzoate synthase
Paralog alert: 0.56 [within 20: 0.15] - ratio of genomes with paralogs
Cluster includes: AEEP DGOD GUDD GUDX MENC RHMD RSPA
MENE - 2-succinylbenzoate--CoA ligase
Paralog alert: 0.84 [within 20: 0.45] - ratio of genomes with paralogs
Cluster includes: ACSA CAIC ENTE FADK LCFA MENE PRPE
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
178_V 395_V 0.94 0.00
43_G 240_L 0.79 0.00
87_V 29_N 0.77 0.00
186_I 340_M 0.75 0.00
119_L 122_L 0.74 0.00
180_P 103_A 0.73 0.00
55_T 29_N 0.73 0.00
167_T 66_L 0.73 0.00
171_G 393_R 0.72 0.00
34_L 321_Q 0.72 0.00
202_F 291_S 0.71 0.00
85_F 31_R 0.71 0.00
28_D 307_L 0.70 0.00
210_I 293_L 0.70 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 1.9855 seconds.