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OPENSEQ.org
HOLA - NADD
UniProt: P28630 - P0A752
Length: 556
Sequences: 337
Seq/Len: 0.62
I_Prob: 0.00
HOLA - DNA polymerase III subunit delta
Paralog alert: 0.85 [within 20: 0.09] - ratio of genomes with paralogs
Cluster includes: HOLA 		NADD - Nicotinate-nucleotide adenylyltransferase
Paralog alert: 0.03 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: NADD
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
255_L 37_I 1.49 0.00
135_V 86_A 1.42 0.00
195_G 92_W 1.39 0.00
185_L 34_R 1.38 0.00
75_A 182_T 1.36 0.00
82_L 124_L 1.28 0.00
112_V 82_P 1.25 0.00
150_W 169_I 1.19 0.00
189_S 172_A 1.19 0.00
5_Y 104_F 1.19 0.00
224_G 73_D 1.19 0.00
292_R 82_P 1.19 0.00
246_L 174_T 1.16 0.00
271_A 182_T 1.16 0.00
247_L 184_I 1.16 0.00
109_L 189_Q 1.16 0.00
117_L 21_K 1.15 0.00
202_V 177_F 1.14 0.00
15_E 7_L 1.13 0.00
66_S 178_N 1.09 0.00
298_L 202_V 1.09 0.00
60_D 46_R 1.08 0.00
279_W 167_G 1.08 0.00
219_D 194_C 1.08 0.00
94_N 210_G 1.08 0.00
21_Y 45_H 1.07 0.00
97_L 105_I 1.07 0.00
42_A 128_H 1.07 0.00
236_L 83_S 1.07 0.00
162_L 70_F 1.06 0.00
184_A 132_C 1.06 0.00
303_Q 153_H 1.06 0.00
288_E 82_P 1.06 0.00
181_L 70_F 1.05 0.00
104_L 111_L 1.04 0.00
58_N 189_Q 1.04 0.00
58_N 60_L 1.04 0.00
125_A 161_L 1.03 0.00
255_L 23_V 1.03 0.00
142_P 40_N 1.02 0.00
236_L 77_L 1.01 0.00
329_L 172_A 1.01 0.00
198_T 118_Y 1.00 0.00
78_Q 54_V 0.99 0.00
205_A 181_A 0.98 0.00
219_D 182_T 0.98 0.00
142_P 123_I 0.98 0.00
329_L 191_G 0.98 0.00
54_S 90_K 0.97 0.00
276_H 209_Q 0.97 0.00
235_Q 127_A 0.97 0.00
151_V 136_G 0.97 0.00
38_V 7_L 0.97 0.00
167_N 7_L 0.97 0.00
150_W 83_S 0.96 0.00
46_G 188_L 0.96 0.00
202_V 178_N 0.96 0.00
240_G 182_T 0.96 0.00
40_Q 207_N 0.95 0.00
40_Q 191_G 0.95 0.00
186_E 61_E 0.95 0.00
306_T 81_A 0.95 0.00
78_Q 174_T 0.95 0.00
324_L 210_G 0.95 0.00
49_E 190_N 0.94 0.00
211_H 153_H 0.94 0.00
17_L 105_I 0.94 0.00
42_A 49_P 0.94 0.00
149_R 80_N 0.94 0.00
236_L 45_H 0.93 0.00
29_L 46_R 0.93 0.00
175_E 131_V 0.93 0.00
260_L 38_I 0.93 0.00
159_N 35_V 0.93 0.00
159_N 189_Q 0.93 0.00
89_P 209_Q 0.93 0.00
122_E 97_G 0.93 0.00
198_T 66_D 0.93 0.00
301_A 35_V 0.92 0.00
101_T 38_I 0.92 0.00
197_L 34_R 0.92 0.00
128_T 127_A 0.91 0.00
135_V 123_I 0.91 0.00
233_L 211_L 0.91 0.00
114_G 104_F 0.91 0.00
20_A 37_I 0.91 0.00
151_V 52_N 0.90 0.00
279_W 38_I 0.90 0.00
150_W 11_T 0.90 0.00
131_A 5_Q 0.90 0.00
217_W 76_E 0.90 0.00
104_L 6_A 0.89 0.00
23_L 24_E 0.89 0.00
110_L 13_D 0.89 0.00
300_Q 90_K 0.89 0.00
78_Q 172_A 0.89 0.00
6_P 37_I 0.88 0.00
198_T 192_E 0.88 0.00
36_D 118_Y 0.88 0.00
139_C 132_C 0.88 0.00
38_V 169_I 0.88 0.00
38_V 130_I 0.88 0.00
26_N 99_D 0.87 0.00
252_R 195_E 0.87 0.00
221_L 34_R 0.87 0.00
270_R 94_Q 0.87 0.00
329_L 85_T 0.87 0.00
214_P 153_H 0.87 0.00
109_L 113_T 0.87 0.00
251_Q 84_Y 0.87 0.00
324_L 69_L 0.87 0.00
27_D 17_Y 0.86 0.00
9_L 193_S 0.86 0.00
27_D 144_P 0.86 0.00
280_Q 182_T 0.86 0.00
47_F 127_A 0.86 0.00
104_L 202_V 0.86 0.00
195_G 70_F 0.86 0.00
2_I 175_P 0.86 0.00
261_K 36_T 0.86 0.00
281_N 26_L 0.86 0.00
22_L 198_L 0.86 0.00
24_L 211_L 0.86 0.00
153_A 26_L 0.86 0.00
296_T 154_L 0.86 0.00
170_L 193_S 0.85 0.00
206_V 44_P 0.85 0.00
246_L 51_A 0.85 0.00
312_L 104_F 0.85 0.00
73_L 167_G 0.85 0.00
247_L 7_L 0.85 0.00
229_A 191_G 0.84 0.00
247_L 131_V 0.84 0.00
60_D 58_H 0.84 0.00
33_E 58_H 0.84 0.00
193_P 184_I 0.84 0.00
4_L 154_L 0.84 0.00
298_L 104_F 0.84 0.00
230_L 123_I 0.84 0.00
267_T 6_A 0.84 0.00
257_L 177_F 0.84 0.00
244_V 86_A 0.84 0.00
228_R 95_E 0.84 0.00
24_L 96_Q 0.84 0.00
59_T 167_G 0.84 0.00
61_W 49_P 0.83 0.00
67_L 98_P 0.83 0.00
219_D 183_I 0.83 0.00
265_A 198_L 0.83 0.00
250_L 58_H 0.83 0.00
120_A 211_L 0.83 0.00
199_L 8_F 0.83 0.00
149_R 169_I 0.83 0.00
272_L 82_P 0.83 0.00
173_C 73_D 0.83 0.00
204_Q 178_N 0.83 0.00
33_E 63_A 0.83 0.00
293_L 76_E 0.82 0.00
184_A 45_H 0.82 0.00
325_E 129_L 0.82 0.00
147_L 26_L 0.82 0.00
72_S 120_Y 0.82 0.00
299_R 181_A 0.82 0.00
218_V 105_I 0.82 0.00
210_A 79_R 0.82 0.00
296_T 8_F 0.82 0.00
258_V 79_R 0.82 0.00
206_V 15_V 0.81 0.00
56_D 44_P 0.81 0.00
172_Y 51_A 0.81 0.00
258_V 130_I 0.81 0.00
166_A 144_P 0.81 0.00
257_L 60_L 0.81 0.00
193_P 192_E 0.81 0.00
182_A 121_E 0.81 0.00
229_A 70_F 0.81 0.00
306_T 87_Q 0.81 0.00
27_D 13_D 0.81 0.00
297_Q 122_T 0.81 0.00
23_L 100_V 0.81 0.00
160_L 120_Y 0.81 0.00
13_L 5_Q 0.81 0.00
197_L 64_I 0.81 0.00
127_F 168_K 0.80 0.00
91_A 33_T 0.80 0.00
146_Q 42_V 0.80 0.00
36_D 46_R 0.80 0.00
207_N 36_T 0.80 0.00
273_F 46_R 0.80 0.00
43_A 53_S 0.80 0.00
121_Q 182_T 0.80 0.00
97_L 5_Q 0.80 0.00
247_L 166_A 0.80 0.00
128_T 190_N 0.80 0.00
265_A 186_E 0.80 0.00
250_L 213_R 0.80 0.00
237_R 68_P 0.80 0.00
111_I 172_A 0.79 0.00
20_A 15_V 0.79 0.00
158_L 130_I 0.79 0.00
314_Q 127_A 0.79 0.00
253_E 76_E 0.79 0.00
96_Q 114_F 0.79 0.00
246_L 100_V 0.79 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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