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OPENSEQ.org
FECI - FECR
UniProt: P23484 - P23485
Length: 490
Sequences: 1539
Seq/Len: 3.30
I_Prob: 0.96
FECI - Probable RNA polymerase sigma factor FecI
Paralog alert: 0.66 [within 20: 0.14] - ratio of genomes with paralogs
Cluster includes: FECI RPOE 		FECR - Protein FecR
Paralog alert: 0.45 [within 20: 0.12] - ratio of genomes with paralogs
Cluster includes: FECR
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3vdoA:BContact Map
2q1zAC:BDContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
162_E 14_R 1.84 0.96
133_Q 57_R 1.76 0.95
158_A 18_H 1.14 0.61
154_K 22_V 1.09 0.56
150_I 281_S 1.02 0.47
69_A 263_R 0.95 0.40
165_L 13_L 0.94 0.38
122_N 200_H 0.92 0.36
157_V 21_A 0.91 0.35
165_L 17_S 0.88 0.31
49_V 179_A 0.83 0.26
161_V 284_F 0.83 0.26
165_L 49_A 0.81 0.24
161_V 20_Y 0.79 0.22
163_H 296_I 0.79 0.22
114_L 299_T 0.78 0.22
139_Y 21_A 0.76 0.20
162_E 17_S 0.76 0.19
33_Q 26_E 0.76 0.19
165_L 53_V 0.73 0.17
28_L 247_L 0.73 0.17
156_Y 113_T 0.73 0.17
154_K 21_A 0.70 0.15
128_A 285_P 0.69 0.14
117_M 272_D 0.69 0.14
133_Q 61_G 0.69 0.14
47_L 294_N 0.65 0.12
20_H 197_V 0.65 0.11
90_L 91_G 0.65 0.11
121_L 122_Q 0.64 0.11
44_D 56_L 0.64 0.11
44_D 267_G 0.64 0.11
62_R 46_N 0.63 0.10
98_A 92_A 0.63 0.10
166_L 253_P 0.62 0.10
43_Q 133_T 0.62 0.10
40_D 39_W 0.62 0.10
77_F 148_V 0.62 0.10
63_S 213_K 0.62 0.10
154_K 17_S 0.62 0.10
139_Y 243_T 0.61 0.10
81_A 124_E 0.61 0.10
75_D 36_W 0.61 0.10
13_F 297_A 0.61 0.09
72_V 250_S 0.61 0.09
27_W 296_I 0.61 0.09
38_A 228_E 0.60 0.09
69_A 43_D 0.60 0.09
45_T 247_L 0.60 0.09
118_L 259_A 0.60 0.09
139_Y 24_S 0.60 0.09
75_D 130_T 0.60 0.09
67_T 294_N 0.60 0.09
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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