May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
PDXA - PPIC
UniProt: P19624 - P0A9L5
Length: 422
Sequences: 354
Seq/Len: 0.85
I_Prob: 0.06
PDXA - 4-hydroxythreonine-4-phosphate dehydrogenase
Paralog alert: 0.21 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: PDXA 		PPIC - Peptidyl-prolyl cis-trans isomerase C
Paralog alert: 0.67 [within 20: 0.18] - ratio of genomes with paralogs
Cluster includes: PPIC
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
220_T 18_A 1.66 0.06
103_R 12_V 1.17 0.01
94_G 5_A 1.14 0.01
238_M 21_L 1.05 0.01
144_S 57_Q 1.04 0.01
22_V 74_P 1.04 0.01
140_F 8_L 1.02 0.01
251_Q 22_L 0.99 0.01
94_G 65_V 0.96 0.01
78_V 60_P 0.93 0.01
157_E 25_I 0.90 0.01
146_A 37_K 0.90 0.01
310_D 3_K 0.88 0.01
173_A 55_Q 0.87 0.01
185_I 12_V 0.87 0.01
136_H 85_H 0.87 0.01
116_L 8_L 0.85 0.01
302_E 25_I 0.85 0.01
158_L 44_G 0.85 0.01
141_E 37_K 0.84 0.01
249_L 29_A 0.84 0.01
181_L 11_L 0.84 0.01
142_E 74_P 0.84 0.00
291_I 61_A 0.83 0.00
167_L 53_F 0.82 0.00
262_L 59_V 0.81 0.00
35_V 75_T 0.81 0.00
9_I 21_L 0.80 0.00
275_Y 77_P 0.79 0.00
111_G 20_D 0.79 0.00
318_L 70_P 0.79 0.00
217_H 11_L 0.78 0.00
114_A 6_A 0.78 0.00
75_L 28_G 0.77 0.00
132_P 18_A 0.77 0.00
114_A 4_T 0.77 0.00
229_V 87_I 0.76 0.00
323_K 23_E 0.76 0.00
318_L 65_V 0.76 0.00
238_M 24_Q 0.76 0.00
320_L 78_L 0.75 0.00
86_A 37_K 0.74 0.00
113_F 61_A 0.74 0.00
13_E 21_L 0.74 0.00
202_R 66_V 0.74 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 1.2702 seconds.