May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

BETA - YBJK
UniProt: P17444 - P75811
Length: 734
Sequences: 534
Seq/Len: 0.74
I_Prob: 0.00

BETA - Choline dehydrogenase
Paralog alert: 0.46 [within 20: 0.09] - ratio of genomes with paralogs
Cluster includes: BETA
YBJK - Uncharacterized HTH-type transcriptional regulator YbjK
Paralog alert: 0.76 [within 20: 0.18] - ratio of genomes with paralogs
Cluster includes: ACRR BDCR BETI COMR ENVR NEMR RUTR SLMA UIDR YBIH YBJK YJDC
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
524_G 30_T 1.36 0.00
524_G 105_L 1.12 0.00
524_G 123_M 1.10 0.00
456_T 82_P 1.10 0.00
435_M 149_F 1.09 0.00
478_C 34_I 1.01 0.00
531_I 143_A 0.96 0.00
434_I 130_S 0.95 0.00
126_R 118_L 0.95 0.00
441_D 153_M 0.95 0.00
25_P 73_A 0.95 0.00
125_Y 30_T 0.94 0.00
531_I 51_G 0.93 0.00
476_G 21_V 0.92 0.00
7_I 169_I 0.90 0.00
223_D 29_V 0.90 0.00
285_L 83_G 0.88 0.00
436_H 176_V 0.86 0.00
302_M 177_A 0.86 0.00
28_S 128_Q 0.86 0.00
252_K 82_P 0.85 0.00
458_E 173_V 0.83 0.00
233_V 120_K 0.82 0.00
434_I 13_I 0.82 0.00
222_T 120_K 0.81 0.00
428_I 72_Q 0.80 0.00
36_G 48_Y 0.80 0.00
477_T 36_T 0.80 0.00
212_P 30_T 0.80 0.00
7_I 136_Q 0.79 0.00
507_I 31_H 0.79 0.00
222_T 29_V 0.79 0.00
31_L 44_S 0.79 0.00
74_N 21_V 0.79 0.00
310_E 90_D 0.77 0.00
185_G 52_I 0.76 0.00
397_V 76_S 0.76 0.00
166_V 177_A 0.75 0.00
535_E 167_E 0.75 0.00
477_T 105_L 0.75 0.00
74_N 177_A 0.75 0.00
284_P 85_C 0.75 0.00
25_P 45_M 0.74 0.00
528_A 135_E 0.74 0.00
212_P 19_E 0.74 0.00
171_P 117_P 0.74 0.00
256_L 166_R 0.73 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 1.681 seconds.