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OPENSEQ.org
FECD - FECE
UniProt: P15029 - P15031
Length: 573
Sequences: 4862
Seq/Len: 8.76
I_Prob: 0.97
FECD - Fe(3+) dicitrate transport system permease protein FecD
Paralog alert: 0.86 [within 20: 0.62] - ratio of genomes with paralogs
Cluster includes: BTUC FECC FECD FEPD FEPG 		FECE - Fe(3+) dicitrate transport ATP-binding protein FecE
Paralog alert: 0.94 [within 20: 0.85] - ratio of genomes with paralogs
Cluster includes: ARTP BTUD CCMA CYSA DDPD DDPF DPPD DPPF FBPC FECE FEPC FHUC FTSE GLNQ GLTL HISP LIVF LIVG LOLD LPTB MALK METN MLAF MODC NIKD NIKE OPPD OPPF PHNC PHNK PHNL POTA POTG PROV PSTB SAPD SAPF SSUB SUFC TAUB THIQ UGPC YADG YBBA YBBL YCJV YDCT YECC YEHX YHDZ YNJD ZNUC
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
4g1uAB:CDContact Map
2nq2AB:CDContact Map
2qi9AB:CDContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
212_A 46_N 1.80 0.97
206_L 102_N 1.38 0.87
212_A 51_L 0.85 0.37
217_L 103_P 0.82 0.33
216_T 80_L 0.77 0.28
263_G 91_I 0.76 0.27
213_R 151_M 0.75 0.26
203_D 102_N 0.68 0.19
209_L 96_L 0.60 0.12
84_D 168_Y 0.59 0.12
77_R 86_L 0.53 0.08
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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