May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

BGLB - PTGA
UniProt: P11988 - P69783
Length: 639
Sequences: 469
Seq/Len: 0.78
I_Prob: 0.00

BGLB - 6-phospho-beta-glucosidase BglB
Paralog alert: 0.68 [within 20: 0.13] - ratio of genomes with paralogs
Cluster includes: ASCB BGLA BGLB
PTGA - Glucose-specific phosphotransferase enzyme IIA component
Paralog alert: 0.76 [within 20: 0.05] - ratio of genomes with paralogs
Cluster includes: PTGA
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
457_T 43_A 1.07 0.00
439_S 144_M 0.88 0.00
117_G 65_D 0.88 0.00
23_W 51_I 0.88 0.00
243_Q 114_V 0.82 0.00
153_A 25_A 0.80 0.00
92_Q 152_K 0.80 0.00
354_Q 72_F 0.79 0.00
149_F 44_E 0.78 0.00
201_H 130_E 0.77 0.00
280_M 78_F 0.76 0.00
168_L 80_I 0.76 0.00
70_A 133_K 0.75 0.00
278_I 23_I 0.75 0.00
90_F 142_S 0.74 0.00
354_Q 74_T 0.74 0.00
413_L 79_S 0.74 0.00
58_A 157_V 0.73 0.00
137_Y 88_L 0.72 0.00
355_K 23_I 0.72 0.00
389_L 60_M 0.71 0.00
87_A 46_I 0.71 0.00
432_R 118_D 0.70 0.00
276_I 134_S 0.70 0.00
383_A 125_L 0.69 0.00
170_F 137_T 0.68 0.00
151_H 131_K 0.68 0.00
145_V 68_I 0.67 0.00
146_I 45_K 0.67 0.00
386_N 135_T 0.66 0.00
235_T 31_I 0.66 0.00
47_R 43_A 0.66 0.00
340_V 62_A 0.66 0.00
289_K 74_T 0.65 0.00
147_D 126_P 0.65 0.00
58_A 95_D 0.65 0.00
64_R 83_D 0.65 0.00
278_I 75_N 0.64 0.00
69_I 43_A 0.64 0.00
444_R 75_N 0.64 0.00
410_P 64_V 0.63 0.00
236_C 80_I 0.62 0.00
95_E 46_I 0.62 0.00
136_N 80_I 0.61 0.00
452_A 92_F 0.61 0.00
437_E 124_D 0.61 0.00
158_T 35_E 0.61 0.00
283_S 114_V 0.61 0.00
30_I 65_D 0.61 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 2.5918 seconds.