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OPENSEQ.org

RLME - YHBY
UniProt: P0C0R7 - P0AGK4
Length: 306
Sequences: 202
Seq/Len: 0.66
I_Prob: 0.00

RLME - Ribosomal RNA large subunit methyltransferase E
Paralog alert: 0.11 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: RLME
YHBY - RNA-binding protein YhbY
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: YHBY
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
101_R 25_G 1.46 0.00
50_K 90_E 1.36 0.00
137_I 51_I 1.36 0.00
27_Q 19_K 1.34 0.00
138_P 54_E 1.23 0.00
79_I 51_I 1.21 0.00
60_A 34_L 1.20 0.00
86_P 23_L 1.19 0.00
64_G 11_L 1.16 0.00
110_L 56_R 1.15 0.00
106_M 30_T 1.14 0.00
114_G 32_G 1.11 0.00
43_Q 12_K 1.11 0.00
133_P 51_I 1.11 0.00
14_L 76_Q 1.11 0.00
123_S 8_K 1.11 0.00
28_K 12_K 1.11 0.00
176_R 9_Q 1.10 0.00
191_D 77_V 1.10 0.00
157_P 80_K 1.10 0.00
8_A 31_E 1.10 0.00
61_A 62_I 1.09 0.00
96_L 55_D 1.08 0.00
138_P 52_A 1.07 0.00
106_M 15_A 1.07 0.00
22_Y 81_T 1.06 0.00
182_F 21_V 1.05 0.00
103_E 38_E 1.04 0.00
31_L 39_Q 1.03 0.00
162_V 26_S 1.03 0.00
122_M 80_K 1.03 0.00
42_I 80_K 1.02 0.00
179_R 55_D 1.02 0.00
51_P 52_A 1.01 0.00
102_D 61_L 0.99 0.00
44_Q 72_A 0.99 0.00
42_I 12_K 0.99 0.00
122_M 24_L 0.99 0.00
198_R 1_M 0.99 0.00
64_G 76_Q 0.99 0.00
165_V 12_K 0.98 0.00
171_F 81_T 0.97 0.00
50_K 35_A 0.97 0.00
14_L 84_L 0.97 0.00
10_S 45_E 0.97 0.00
22_Y 34_L 0.97 0.00
113_V 42_E 0.96 0.00
105_V 49_V 0.96 0.00
101_R 11_L 0.96 0.00
96_L 67_V 0.95 0.00
90_I 35_A 0.95 0.00
206_G 76_Q 0.94 0.00
135_V 38_E 0.94 0.00
89_P 97_R 0.94 0.00
200_V 12_K 0.94 0.00
118_V 12_K 0.94 0.00
114_G 64_E 0.94 0.00
31_L 24_L 0.93 0.00
26_A 11_L 0.93 0.00
203_V 85_Y 0.93 0.00
150_M 24_L 0.92 0.00
113_V 13_G 0.92 0.00
95_F 18_L 0.92 0.00
66_S 34_L 0.91 0.00
51_P 85_Y 0.91 0.00
42_I 29_L 0.91 0.00
150_M 88_T 0.91 0.00
129_M 1_M 0.91 0.00
7_S 84_L 0.91 0.00
202_I 29_L 0.91 0.00
135_V 26_S 0.91 0.00
75_G 72_A 0.90 0.00
182_F 33_V 0.90 0.00
103_E 89_K 0.90 0.00
179_R 7_Q 0.90 0.00
110_L 7_Q 0.89 0.00
87_M 49_V 0.89 0.00
204_A 54_E 0.88 0.00
138_P 82_L 0.88 0.00
76_K 64_E 0.88 0.00
47_K 66_I 0.88 0.00
25_Q 50_K 0.87 0.00
88_D 47_I 0.86 0.00
90_I 62_I 0.86 0.00
130_S 56_R 0.86 0.00
47_K 67_V 0.86 0.00
109_L 54_E 0.85 0.00
187_V 19_K 0.85 0.00
49_F 84_L 0.84 0.00
82_C 43_H 0.84 0.00
7_S 30_T 0.84 0.00
179_R 86_R 0.84 0.00
10_S 27_N 0.84 0.00
163_V 11_L 0.83 0.00
134_A 84_L 0.83 0.00
204_A 85_Y 0.83 0.00
19_S 4_S 0.83 0.00
76_K 90_E 0.83 0.00
64_G 43_H 0.82 0.00
179_R 75_V 0.82 0.00
120_V 63_V 0.82 0.00
160_S 12_K 0.81 0.00
44_Q 27_N 0.81 0.00
170_G 18_L 0.81 0.00
82_C 83_V 0.81 0.00
53_M 50_K 0.81 0.00
49_F 72_A 0.81 0.00
106_M 84_L 0.81 0.00
50_K 47_I 0.80 0.00
195_A 1_M 0.80 0.00
84_L 37_I 0.80 0.00
198_R 77_V 0.80 0.00
115_D 54_E 0.79 0.00
28_K 32_G 0.79 0.00
101_R 15_A 0.79 0.00
36_W 43_H 0.79 0.00
61_A 40_A 0.79 0.00
15_Q 97_R 0.79 0.00
172_D 38_E 0.78 0.00
149_E 39_Q 0.78 0.00
129_M 73_C 0.78 0.00
5_K 50_K 0.78 0.00
96_L 24_L 0.78 0.00
92_G 56_R 0.78 0.00
208_K 88_T 0.77 0.00
174_Y 49_V 0.77 0.00
30_G 1_M 0.77 0.00
163_V 33_V 0.77 0.00
122_M 35_A 0.77 0.00
42_I 47_I 0.77 0.00
180_S 38_E 0.77 0.00
206_G 69_E 0.77 0.00
203_V 22_V 0.77 0.00
33_S 77_V 0.76 0.00
195_A 3_L 0.76 0.00
111_E 13_G 0.76 0.00
19_S 91_R 0.76 0.00
51_P 5_T 0.76 0.00
151_C 9_Q 0.76 0.00
26_A 12_K 0.76 0.00
107_K 80_K 0.75 0.00
14_L 66_I 0.75 0.00
101_R 24_L 0.75 0.00
138_P 43_H 0.75 0.00
181_L 75_V 0.75 0.00
66_S 18_L 0.75 0.00
64_G 53_T 0.75 0.00
82_C 9_Q 0.74 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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