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OPENSEQ.org

RL17 - SECY
UniProt: P0AG44 - P0AGA2
Length: 570
Sequences: 976
Seq/Len: 1.76
I_Prob: 0.01

RL17 - 50S ribosomal protein L17
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RL17
SECY - Protein translocase subunit SecY
Paralog alert: 0.10 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: SECY
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
70_T 414_M 1.20 0.01
58_D 413_I 1.19 0.01
27_S 235_V 1.13 0.01
35_K 23_L 1.10 0.01
40_K 419_Q 1.08 0.01
36_T 121_R 1.08 0.01
116_V 343_A 1.07 0.01
43_E 187_I 1.07 0.01
63_R 372_R 1.06 0.01
55_A 225_V 1.04 0.01
22_R 368_K 1.04 0.01
61_A 244_I 1.04 0.01
32_E 433_L 1.03 0.01
7_G 243_R 1.03 0.01
55_A 373_L 1.01 0.01
55_A 290_I 1.01 0.01
40_K 391_M 1.00 0.01
66_A 265_L 1.00 0.01
62_N 91_I 1.00 0.01
113_I 323_S 0.99 0.01
16_H 119_Y 0.98 0.01
66_A 346_L 0.97 0.01
40_K 67_F 0.97 0.01
55_A 243_R 0.97 0.01
47_V 292_S 0.96 0.01
6_S 257_V 0.96 0.01
107_N 310_L 0.94 0.01
33_I 416_F 0.93 0.01
97_I 320_L 0.93 0.01
31_H 229_A 0.92 0.01
63_R 365_Y 0.92 0.00
110_M 322_A 0.91 0.00
6_S 206_T 0.91 0.00
66_A 239_R 0.90 0.00
40_K 399_F 0.90 0.00
97_I 65_N 0.90 0.00
83_L 246_V 0.89 0.00
71_R 230_V 0.88 0.00
74_E 130_F 0.88 0.00
56_K 373_L 0.87 0.00
23_N 337_F 0.87 0.00
27_S 170_F 0.86 0.00
70_T 183_I 0.85 0.00
31_H 269_V 0.85 0.00
89_S 22_R 0.84 0.00
18_Q 125_L 0.84 0.00
105_G 273_G 0.84 0.00
88_A 61_I 0.84 0.00
25_A 28_G 0.84 0.00
40_K 168_T 0.84 0.00
75_I 71_A 0.83 0.00
28_L 333_T 0.83 0.00
25_A 169_M 0.83 0.00
88_A 301_N 0.83 0.00
100_C 382_T 0.82 0.00
49_E 269_V 0.82 0.00
111_A 286_F 0.82 0.00
95_T 226_L 0.82 0.00
95_T 290_I 0.82 0.00
65_L 257_V 0.81 0.00
34_I 39_I 0.81 0.00
54_L 240_G 0.81 0.00
11_N 129_I 0.81 0.00
55_A 387_I 0.81 0.00
35_K 148_L 0.81 0.00
83_L 224_A 0.81 0.00
70_T 174_L 0.81 0.00
72_D 422_T 0.80 0.00
30_R 190_I 0.80 0.00
85_P 315_P 0.80 0.00
63_R 88_A 0.80 0.00
6_S 123_G 0.79 0.00
109_P 269_V 0.79 0.00
48_V 60_I 0.79 0.00
3_H 156_F 0.78 0.00
115_L 350_G 0.78 0.00
40_K 392_R 0.78 0.00
107_N 306_I 0.78 0.00
35_K 27_I 0.78 0.00
91_A 1_M 0.78 0.00
73_N 338_N 0.77 0.00
31_H 252_Q 0.77 0.00
78_K 171_L 0.77 0.00
27_S 333_T 0.77 0.00
80_F 199_L 0.77 0.00
50_P 349_S 0.76 0.00
110_M 369_V 0.76 0.00
33_I 437_N 0.76 0.00
97_I 141_N 0.76 0.00
12_R 333_T 0.76 0.00
100_C 189_I 0.76 0.00
51_L 44_I 0.76 0.00
13_N 87_S 0.76 0.00
91_A 92_I 0.75 0.00
10_L 44_I 0.75 0.00
57_T 423_L 0.75 0.00
62_N 233_F 0.75 0.00
107_N 421_Q 0.75 0.00
50_P 384_I 0.75 0.00
101_G 71_A 0.75 0.00
39_P 170_F 0.75 0.00
98_L 420_V 0.75 0.00
13_N 27_I 0.75 0.00
31_H 126_V 0.74 0.00
24_M 21_R 0.74 0.00
30_R 105_I 0.74 0.00
74_E 391_M 0.74 0.00
62_N 161_V 0.74 0.00
32_E 103_A 0.74 0.00
80_F 267_L 0.73 0.00
116_V 35_I 0.73 0.00
49_E 423_L 0.73 0.00
55_A 95_L 0.73 0.00
51_L 49_L 0.73 0.00
34_I 162_V 0.73 0.00
23_N 317_Y 0.73 0.00
18_Q 364_K 0.73 0.00
70_T 17_G 0.73 0.00
22_R 396_K 0.73 0.00
56_K 340_R 0.72 0.00
16_H 230_V 0.72 0.00
61_A 431_S 0.72 0.00
80_F 282_S 0.72 0.00
81_N 373_L 0.72 0.00
26_G 432_A 0.72 0.00
68_A 196_V 0.72 0.00
46_R 312_P 0.72 0.00
82_E 307_S 0.72 0.00
54_L 22_R 0.72 0.00
40_K 239_R 0.72 0.00
22_R 335_L 0.71 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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