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YEJB - YEJF
UniProt: P0AFU0 - P33916
Length: 893
Sequences: 2349
Seq/Len: 2.76
I_Prob: 0.25
YEJB - Inner membrane ABC transporter permease protein YejB
Paralog alert: 0.79 [within 20: 0.10] - ratio of genomes with paralogs
Cluster includes: DDPB DDPC DPPB DPPC GSIC GSID NIKB NIKC OPPB OPPC SAPB SAPC YEJB YEJE 		YEJF - Uncharacterized ABC transporter ATP-binding protein YejF
Paralog alert: 0.90 [within 20: 0.18] - ratio of genomes with paralogs
Cluster includes: ALSA ARAG GSIA LSRA MGLA MODF RBSA UUP XYLG YBHF YBIT YEJF YHES YJJK YPHE YTFR
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3rlfAB:AB:F:GContact Map
3d31AB:AB:CDContact Map
2onkABGF:ABGF:CHDIContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
261_V 53_L 1.31 0.25
266_K 169_M 1.29 0.24
263_A 106_N 1.23 0.20
277_H 117_E 1.14 0.16
355_V 108_L 0.98 0.09
268_V 121_L 0.98 0.09
270_E 83_D 0.91 0.07
281_N 106_N 0.89 0.07
266_K 114_Q 0.88 0.06
266_K 117_E 0.87 0.06
265_A 58_L 0.81 0.05
262_T 169_M 0.80 0.05
276_K 113_K 0.73 0.04
23_N 452_P 0.73 0.03
9_L 326_S 0.71 0.03
273_I 243_T 0.70 0.03
270_E 87_R 0.69 0.03
34_P 387_E 0.69 0.03
259_Y 106_N 0.68 0.03
266_K 106_N 0.68 0.03
280_R 452_P 0.65 0.03
144_T 375_L 0.65 0.02
258_Q 103_V 0.64 0.02
9_L 306_S 0.62 0.02
330_M 236_V 0.62 0.02
244_T 326_S 0.61 0.02
259_Y 113_K 0.61 0.02
259_Y 108_L 0.61 0.02
201_L 316_G 0.60 0.02
160_V 487_H 0.60 0.02
285_L 465_L 0.59 0.02
26_I 49_S 0.59 0.02
112_R 131_R 0.58 0.02
136_S 52_A 0.58 0.02
321_A 478_A 0.58 0.02
147_I 486_L 0.57 0.02
350_I 363_R 0.57 0.02
129_I 55_I 0.57 0.02
298_F 119_L 0.57 0.02
110_Y 210_M 0.57 0.02
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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