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OPENSEQ.org
NUOH - NUOL
UniProt: P0AFD4 - P33607
Length: 938
Sequences: 2579
Seq/Len: 2.84
I_Prob: 0.34
NUOH - NADH-quinone oxidoreductase subunit H
Paralog alert: 0.24 [within 20: 0.05] - ratio of genomes with paralogs
Cluster includes: HYCD HYFC NUOH 		NUOL - NADH-quinone oxidoreductase subunit L
Paralog alert: 0.33 [within 20: 0.11] - ratio of genomes with paralogs
Cluster includes: HYCC HYFB HYFD HYFF NUOL NUOM NUON
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
4he8LF:HC:MG:NIContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
196_F 347_L 1.34 0.34
246_V 181_L 1.23 0.26
116_I 273_F 1.16 0.21
223_D 306_R 1.13 0.20
294_Y 260_T 1.12 0.19
154_L 343_A 1.12 0.19
28_C 151_Y 1.11 0.19
115_G 403_L 1.10 0.18
57_S 176_V 1.08 0.17
165_M 593_W 1.06 0.16
199_F 149_C 1.03 0.14
68_F 145_G 1.01 0.14
214_Q 354_L 1.01 0.14
51_R 234_P 1.00 0.13
128_Y 145_G 1.00 0.13
70_K 305_K 0.97 0.12
243_I 316_I 0.97 0.12
227_I 347_L 0.97 0.12
116_I 499_V 0.97 0.12
128_Y 260_T 0.96 0.11
236_L 403_L 0.94 0.10
255_L 184_A 0.93 0.10
150_S 448_V 0.93 0.10
100_I 536_Y 0.92 0.10
244_G 413_N 0.92 0.10
120_L 343_A 0.92 0.10
125_L 584_L 0.91 0.09
161_G 166_A 0.91 0.09
142_S 368_L 0.91 0.09
28_C 181_L 0.90 0.09
53_G 375_V 0.89 0.09
294_Y 142_G 0.89 0.09
257_F 575_L 0.89 0.09
304_I 116_F 0.89 0.09
225_Y 38_V 0.88 0.08
174_F 446_H 0.88 0.08
23_L 536_Y 0.88 0.08
136_S 459_V 0.87 0.08
100_I 436_V 0.87 0.08
292_P 461_L 0.87 0.08
74_I 332_I 0.86 0.08
120_L 379_F 0.86 0.08
251_L 576_S 0.86 0.08
251_L 389_L 0.85 0.07
100_I 571_I 0.85 0.07
41_G 13_I 0.84 0.07
165_M 265_L 0.84 0.07
123_A 263_V 0.84 0.07
146_A 307_V 0.84 0.07
239_V 280_L 0.83 0.07
217_A 453_H 0.83 0.07
101_V 166_A 0.83 0.07
200_A 264_Y 0.82 0.07
133_A 409_N 0.82 0.07
94_L 130_L 0.82 0.07
154_L 414_L 0.82 0.07
51_R 313_M 0.81 0.06
187_W 304_I 0.81 0.06
255_L 406_A 0.81 0.06
227_I 455_L 0.81 0.06
282_F 362_I 0.81 0.06
115_G 183_F 0.81 0.06
243_I 429_T 0.81 0.06
84_T 397_F 0.81 0.06
258_G 115_R 0.80 0.06
237_F 135_N 0.80 0.06
240_G 320_F 0.80 0.06
161_G 587_E 0.80 0.06
62_A 417_A 0.80 0.06
306_L 494_E 0.80 0.06
201_I 403_L 0.79 0.06
262_G 174_T 0.79 0.06
22_L 90_S 0.79 0.06
176_M 415_M 0.79 0.06
89_I 403_L 0.79 0.06
132_F 117_F 0.79 0.06
235_G 297_A 0.79 0.06
52_V 263_V 0.79 0.06
308_L 406_A 0.78 0.06
124_G 192_L 0.78 0.06
221_L 411_H 0.78 0.06
61_V 188_L 0.78 0.06
70_K 399_K 0.78 0.06
217_A 465_T 0.78 0.06
112_L 503_V 0.78 0.06
62_A 587_E 0.78 0.06
125_L 125_A 0.78 0.06
205_A 398_S 0.77 0.05
146_A 426_S 0.77 0.05
273_L 370_K 0.77 0.05
313_L 166_A 0.77 0.05
105_P 331_A 0.77 0.05
36_E 390_P 0.77 0.05
221_L 224_G 0.77 0.05
100_I 351_S 0.77 0.05
269_I 499_V 0.77 0.05
131_L 137_L 0.76 0.05
79_D 156_F 0.76 0.05
132_F 394_A 0.76 0.05
223_D 293_L 0.76 0.05
298_M 361_N 0.76 0.05
195_G 8_I 0.76 0.05
230_S 427_L 0.75 0.05
93_S 320_F 0.75 0.05
128_Y 174_T 0.75 0.05
246_V 14_G 0.75 0.05
236_L 544_L 0.75 0.05
102_P 115_R 0.75 0.05
41_G 93_T 0.75 0.05
174_F 378_C 0.75 0.05
201_I 135_N 0.75 0.05
133_A 406_A 0.75 0.05
109_V 218_A 0.75 0.05
230_S 589_G 0.75 0.05
142_S 118_A 0.74 0.05
82_I 575_L 0.74 0.05
251_L 362_I 0.74 0.05
25_V 557_A 0.74 0.05
188_N 365_M 0.74 0.05
230_S 116_F 0.74 0.05
33_S 263_V 0.74 0.05
255_L 458_I 0.74 0.05
146_A 402_I 0.74 0.05
253_V 544_L 0.74 0.05
253_V 577_R 0.74 0.05
117_L 226_A 0.73 0.05
255_L 518_L 0.73 0.05
136_S 158_Y 0.73 0.04
253_V 515_K 0.73 0.04
116_I 515_K 0.73 0.04
196_F 186_F 0.73 0.04
199_F 241_D 0.73 0.04
72_D 349_S 0.73 0.04
231_G 552_P 0.73 0.04
64_M 544_L 0.73 0.04
76_K 66_T 0.73 0.04
85_L 578_F 0.73 0.04
201_I 438_H 0.73 0.04
168_V 171_F 0.73 0.04
133_A 105_W 0.73 0.04
82_I 287_G 0.73 0.04
147_M 343_A 0.73 0.04
231_G 377_L 0.72 0.04
231_G 271_G 0.72 0.04
206_V 174_T 0.72 0.04
235_G 320_F 0.72 0.04
294_Y 145_G 0.72 0.04
130_V 381_V 0.72 0.04
73_W 99_I 0.72 0.04
61_V 151_Y 0.72 0.04
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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