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OPENSEQ.org

NUOE - NUOI
UniProt: P0AFD1 - P0AFD6
Length: 346
Sequences: 256
Seq/Len: 0.76
I_Prob: 0.00

NUOE - NADH-quinone oxidoreductase subunit E
Paralog alert: 0.19 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: NUOE
NUOI - NADH-quinone oxidoreductase subunit I
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: NUOI
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3i9v2B:9G:3CContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
143_M 80_A 1.47 0.00
121_T 168_N 1.43 0.00
34_A 16_S 1.34 0.00
16_A 165_E 1.33 0.00
122_F 54_P 1.29 0.00
144_M 113_A 1.23 0.00
20_E 26_A 1.21 0.00
127_T 120_F 1.18 0.00
17_A 122_M 1.15 0.00
50_V 40_L 1.14 0.00
78_Q 16_S 1.12 0.00
91_Y 104_L 1.12 0.00
111_K 22_L 1.10 0.00
150_H 117_T 1.10 0.00
93_D 139_I 1.10 0.00
50_V 123_G 1.10 0.00
22_I 17_I 1.09 0.00
84_V 118_P 1.07 0.00
60_D 14_V 1.04 0.00
120_T 139_I 1.04 0.00
89_I 165_E 1.04 0.00
74_T 83_K 1.02 0.00
90_R 96_F 1.02 0.00
69_V 78_Q 1.01 0.00
160_E 83_K 1.00 0.00
146_D 41_P 1.00 0.00
140_G 4_K 0.99 0.00
89_I 17_I 0.99 0.00
115_I 35_E 0.96 0.00
60_D 39_Y 0.96 0.00
87_H 22_L 0.96 0.00
150_H 123_G 0.95 0.00
10_E 17_I 0.95 0.00
146_D 131_V 0.95 0.00
143_M 40_L 0.94 0.00
14_L 101_F 0.94 0.00
69_V 135_E 0.94 0.00
105_I 125_Y 0.94 0.00
154_T 24_A 0.93 0.00
96_V 78_Q 0.93 0.00
150_H 158_I 0.93 0.00
87_H 19_M 0.93 0.00
159_P 167_E 0.92 0.00
16_A 168_N 0.92 0.00
37_I 25_F 0.92 0.00
120_T 20_I 0.91 0.00
107_A 69_A 0.91 0.00
131_T 32_M 0.91 0.00
90_R 113_A 0.91 0.00
79_I 61_V 0.90 0.00
26_M 104_L 0.89 0.00
162_L 132_Y 0.89 0.00
99_I 142_P 0.89 0.00
156_E 36_E 0.89 0.00
134_L 42_P 0.89 0.00
77_S 161_K 0.89 0.00
165_Y 18_W 0.89 0.00
49_W 144_K 0.89 0.00
19_R 113_A 0.89 0.00
66_A 22_L 0.88 0.00
35_A 39_Y 0.88 0.00
151_A 114_I 0.87 0.00
27_H 108_A 0.87 0.00
86_R 12_T 0.87 0.00
50_V 141_G 0.87 0.00
103_Q 147_E 0.87 0.00
31_D 176_K 0.87 0.00
55_I 10_F 0.86 0.00
16_A 25_F 0.86 0.00
63_G 136_D 0.86 0.00
53_G 12_T 0.86 0.00
114_N 20_I 0.86 0.00
60_D 113_A 0.86 0.00
84_V 59_R 0.85 0.00
66_A 166_A 0.85 0.00
163_E 39_Y 0.85 0.00
41_K 86_R 0.85 0.00
33_R 14_V 0.85 0.00
119_Q 122_M 0.85 0.00
50_V 39_Y 0.85 0.00
44_Q 50_L 0.85 0.00
158_I 21_G 0.84 0.00
81_R 118_P 0.84 0.00
130_P 48_I 0.84 0.00
39_A 96_F 0.84 0.00
116_K 139_I 0.84 0.00
101_G 108_A 0.84 0.00
91_Y 162_D 0.84 0.00
129_L 17_I 0.84 0.00
29_Y 120_F 0.83 0.00
120_T 169_E 0.83 0.00
67_S 111_T 0.83 0.00
37_I 40_L 0.83 0.00
107_A 15_R 0.83 0.00
38_E 79_K 0.83 0.00
160_E 23_H 0.83 0.00
165_Y 20_I 0.83 0.00
68_D 116_L 0.83 0.00
79_I 72_V 0.83 0.00
65_P 84_D 0.82 0.00
48_G 172_P 0.82 0.00
144_M 132_Y 0.81 0.00
94_S 96_F 0.81 0.00
161_L 50_L 0.81 0.00
128_L 17_I 0.81 0.00
49_W 118_P 0.80 0.00
28_H 156_M 0.80 0.00
159_P 36_E 0.80 0.00
68_D 140_S 0.80 0.00
14_L 86_R 0.80 0.00
30_E 179_L 0.79 0.00
30_E 82_T 0.79 0.00
19_R 21_G 0.79 0.00
147_E 49_V 0.79 0.00
144_M 90_E 0.79 0.00
79_I 74_C 0.79 0.00
109_L 135_E 0.79 0.00
56_H 166_A 0.78 0.00
94_S 97_S 0.78 0.00
33_R 132_Y 0.78 0.00
86_R 135_E 0.78 0.00
89_I 19_M 0.78 0.00
126_F 15_R 0.78 0.00
127_T 73_G 0.78 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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