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OPENSEQ.org

NUOA - NUOL
UniProt: P0AFC3 - P33607
Length: 760
Sequences: 784
Seq/Len: 1.08
I_Prob: 0.01

NUOA - NADH-quinone oxidoreductase subunit A
Paralog alert: 0.07 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: NUOA
NUOL - NADH-quinone oxidoreductase subunit L
Paralog alert: 0.33 [within 20: 0.11] - ratio of genomes with paralogs
Cluster includes: HYCC HYFB HYFD HYFF NUOL NUOM NUON
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3rkoLB:MC:ND:AEContact Map
4he8LF:MG:NI:ABContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
31_L 299_L 1.44 0.01
124_D 588_N 1.34 0.01
68_F 182_A 1.23 0.01
125_W 388_A 1.20 0.01
18_I 133_A 1.16 0.01
73_M 260_T 1.12 0.01
82_A 104_S 1.11 0.01
59_S 264_Y 1.08 0.01
33_G 299_L 1.08 0.01
86_F 184_A 1.06 0.01
52_S 142_G 1.05 0.01
69_Y 173_V 1.04 0.01
17_A 76_G 1.04 0.01
31_L 322_A 0.98 0.00
80_V 141_L 0.98 0.00
82_A 197_F 0.97 0.00
91_S 182_A 0.97 0.00
58_G 149_C 0.96 0.00
117_L 99_I 0.95 0.00
72_A 67_W 0.95 0.00
76_V 401_E 0.94 0.00
31_L 436_V 0.94 0.00
87_A 384_A 0.93 0.00
113_G 291_L 0.93 0.00
77_I 382_G 0.93 0.00
16_F 603_V 0.92 0.00
115_V 195_L 0.92 0.00
24_I 502_V 0.92 0.00
96_G 15_F 0.92 0.00
85_L 504_G 0.92 0.00
45_S 557_A 0.91 0.00
67_K 386_L 0.90 0.00
52_S 121_N 0.90 0.00
81_E 324_G 0.90 0.00
18_I 195_L 0.90 0.00
18_I 286_V 0.89 0.00
58_G 313_M 0.89 0.00
93_R 606_L 0.89 0.00
65_S 121_N 0.89 0.00
60_A 307_V 0.89 0.00
120_I 545_Y 0.88 0.00
22_V 282_L 0.88 0.00
115_V 381_V 0.88 0.00
120_I 316_I 0.88 0.00
109_V 92_V 0.88 0.00
44_R 373_P 0.87 0.00
27_C 308_L 0.87 0.00
54_I 34_G 0.87 0.00
84_Y 400_D 0.86 0.00
108_F 43_L 0.86 0.00
19_F 534_W 0.86 0.00
68_F 263_V 0.86 0.00
76_V 299_L 0.86 0.00
114_L 598_M 0.85 0.00
79_D 156_F 0.85 0.00
68_F 39_G 0.85 0.00
115_V 12_L 0.85 0.00
76_V 323_L 0.84 0.00
111_L 600_I 0.84 0.00
33_G 194_T 0.84 0.00
22_V 420_V 0.84 0.00
76_V 273_F 0.84 0.00
19_F 236_Q 0.84 0.00
68_F 306_R 0.84 0.00
17_A 264_Y 0.84 0.00
15_A 260_T 0.84 0.00
46_K 106_Y 0.83 0.00
31_L 575_L 0.83 0.00
68_F 8_I 0.82 0.00
69_Y 149_C 0.82 0.00
34_G 65_W 0.82 0.00
104_A 475_L 0.82 0.00
70_L 156_F 0.81 0.00
20_L 511_L 0.81 0.00
61_R 360_Q 0.81 0.00
80_V 403_L 0.80 0.00
122_A 344_L 0.80 0.00
28_C 506_L 0.80 0.00
103_A 192_L 0.80 0.00
68_F 323_L 0.80 0.00
40_R 427_L 0.80 0.00
21_I 551_K 0.80 0.00
99_G 129_V 0.79 0.00
65_S 260_T 0.79 0.00
25_G 462_I 0.79 0.00
115_V 361_N 0.79 0.00
67_K 249_V 0.79 0.00
16_F 133_A 0.78 0.00
32_V 349_S 0.78 0.00
76_V 149_C 0.78 0.00
37_L 604_V 0.78 0.00
34_G 576_S 0.78 0.00
87_A 393_T 0.78 0.00
77_I 173_V 0.78 0.00
73_M 339_A 0.78 0.00
36_F 420_V 0.78 0.00
63_R 592_R 0.78 0.00
71_V 133_A 0.78 0.00
31_L 67_W 0.78 0.00
115_V 370_K 0.77 0.00
60_A 593_W 0.77 0.00
103_A 293_L 0.77 0.00
31_L 118_A 0.77 0.00
107_I 548_V 0.77 0.00
97_W 273_F 0.77 0.00
114_L 308_L 0.77 0.00
86_F 300_V 0.77 0.00
92_I 8_I 0.77 0.00
56_S 504_G 0.77 0.00
35_W 331_A 0.76 0.00
12_H 283_V 0.76 0.00
90_T 602_A 0.76 0.00
45_S 580_G 0.76 0.00
82_A 4_L 0.76 0.00
108_F 440_K 0.76 0.00
72_A 461_L 0.76 0.00
60_A 194_T 0.76 0.00
83_L 141_L 0.76 0.00
83_L 102_Y 0.76 0.00
110_L 244_A 0.76 0.00
114_L 283_V 0.76 0.00
104_A 508_A 0.75 0.00
117_L 96_G 0.75 0.00
75_F 100_H 0.75 0.00
34_G 332_I 0.75 0.00
92_I 368_L 0.75 0.00
123_L 93_T 0.75 0.00
80_V 397_F 0.75 0.00
40_R 424_M 0.74 0.00
107_I 410_G 0.74 0.00
31_L 17_L 0.74 0.00
25_G 14_G 0.74 0.00
47_N 187_I 0.74 0.00
18_I 43_L 0.74 0.00
64_L 376_Y 0.74 0.00
115_V 462_I 0.74 0.00
32_V 39_G 0.73 0.00
122_A 464_S 0.73 0.00
103_A 392_V 0.73 0.00
67_K 12_L 0.73 0.00
45_S 18_L 0.73 0.00
20_L 420_V 0.73 0.00
96_G 405_G 0.73 0.00
56_S 19_A 0.73 0.00
87_A 174_T 0.73 0.00
38_G 21_S 0.73 0.00
102_E 292_L 0.72 0.00
54_I 92_V 0.72 0.00
58_G 308_L 0.72 0.00
18_I 606_L 0.72 0.00
92_I 273_F 0.72 0.00
82_A 110_E 0.72 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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