| UniProt: | P0AFA9 - P33594 | ||
| Length: | 545 | ||
| Sequences: | 7723 | ||
| Seq/Len: | 15.00 | ||
| I_Prob: | 0.00 |
| NIKC - Nickel transport system permease protein NikC
Paralog alert: 0.90 [within 20: 0.63] - ratio of genomes with paralogs Cluster includes: DDPB DDPC DPPB DPPC GSIC GSID NIKB NIKC OPPB OPPC SAPB SAPC YEJB YEJE |
NIKE - Nickel import ATP-binding protein NikE Paralog alert: 0.95 [within 20: 0.88] - ratio of genomes with paralogs Cluster includes: ARTP BTUD CCMA CYSA DDPD DDPF DPPD DPPF FBPC FECE FEPC FHUC FTSE GLNQ GLTL HISP LIVF LIVG LOLD LPTB MALK METN MLAF MODC NIKD NIKE OPPD OPPF PHNC PHNK PHNL POTA POTG PROV PSTB SAPD SAPF SSUB SUFC TAUB THIQ UGPC YADG YBBA YBBL YCJV YDCT YECC YEHX YHDZ YNJD ZNUC |
Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
| 3rlf | AB:G:F | Contact Map |
| 3d31 | AB:CD | Contact Map |
| 2onk | ABGF:CHDI | Contact Map |
| i | j | Scaled Score | I_Prob |
Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)
Text file of predictions (includes both intra and inter preds)