May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

FRE - GLTD
UniProt: P0AEN1 - P09832
Length: 705
Sequences: 430
Seq/Len: 0.63
I_Prob: 0.00

FRE - NAD(P)H-flavin reductase
Paralog alert: 0.73 [within 20: 0.08] - ratio of genomes with paralogs
Cluster includes: FENR FRE
GLTD - Glutamate synthase [NADPH] small chain
Paralog alert: 0.56 [within 20: 0.10] - ratio of genomes with paralogs
Cluster includes: GLTD PRET
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
144_Q 93_V 1.52 0.00
123_L 295_G 1.38 0.00
23_I 263_F 1.32 0.00
181_T 88_N 1.24 0.00
27_A 214_K 1.19 0.00
152_L 247_G 1.19 0.00
87_I 390_V 1.17 0.00
23_I 293_L 1.16 0.00
141_R 206_F 1.09 0.00
140_G 53_P 1.08 0.00
58_K 208_G 1.08 0.00
109_I 245_M 1.05 0.00
107_I 398_A 1.05 0.00
15_T 233_D 1.05 0.00
153_E 144_Q 1.04 0.00
57_E 23_I 1.02 0.00
60_F 396_I 1.01 0.00
217_E 396_I 1.01 0.00
65_I 298_T 1.00 0.00
102_E 152_I 1.00 0.00
41_M 248_G 0.99 0.00
179_T 418_S 0.98 0.00
35_Q 387_E 0.97 0.00
148_D 364_M 0.97 0.00
104_R 112_D 0.97 0.00
209_I 88_N 0.96 0.00
107_I 305_T 0.96 0.00
123_L 305_T 0.96 0.00
33_A 186_T 0.96 0.00
106_M 420_G 0.96 0.00
7_K 212_E 0.95 0.00
100_D 134_G 0.95 0.00
87_I 293_L 0.95 0.00
109_I 263_F 0.95 0.00
110_A 225_L 0.94 0.00
141_R 218_E 0.93 0.00
72_L 281_P 0.93 0.00
146_L 110_L 0.92 0.00
35_Q 158_G 0.92 0.00
20_R 390_V 0.92 0.00
75_K 157_A 0.92 0.00
80_R 384_A 0.92 0.00
29_F 109_T 0.92 0.00
151_E 152_I 0.91 0.00
7_K 413_S 0.91 0.00
39_V 109_T 0.90 0.00
27_A 217_T 0.90 0.00
74_A 466_I 0.90 0.00
35_Q 233_D 0.90 0.00
117_Y 395_V 0.89 0.00
33_A 225_L 0.88 0.00
33_A 351_I 0.88 0.00
117_Y 305_T 0.87 0.00
205_E 293_L 0.87 0.00
100_D 305_T 0.87 0.00
9_T 245_M 0.86 0.00
11_V 48_L 0.85 0.00
80_R 391_P 0.85 0.00
16_D 314_V 0.85 0.00
109_I 292_V 0.85 0.00
37_L 180_E 0.85 0.00
10_S 279_D 0.84 0.00
107_I 39_Q 0.84 0.00
11_V 222_D 0.84 0.00
23_I 208_G 0.84 0.00
89_V 224_Q 0.84 0.00
90_D 218_E 0.84 0.00
169_E 28_F 0.83 0.00
110_A 305_T 0.83 0.00
125_A 366_R 0.83 0.00
51_M 410_A 0.83 0.00
35_Q 460_R 0.83 0.00
80_R 350_G 0.82 0.00
146_L 54_Y 0.82 0.00
140_G 54_Y 0.82 0.00
18_V 121_N 0.82 0.00
117_Y 158_G 0.82 0.00
151_E 237_L 0.82 0.00
143_E 157_A 0.81 0.00
64_H 399_F 0.81 0.00
16_D 106_G 0.81 0.00
35_Q 165_L 0.81 0.00
153_E 171_K 0.81 0.00
77_V 206_F 0.80 0.00
198_I 307_V 0.80 0.00
16_D 398_A 0.80 0.00
11_V 420_G 0.80 0.00
187_L 174_V 0.80 0.00
133_D 437_P 0.80 0.00
33_A 89_T 0.80 0.00
51_M 257_V 0.80 0.00
147_Y 164_V 0.80 0.00
96_A 221_R 0.79 0.00
16_D 333_K 0.79 0.00
105_P 356_N 0.79 0.00
185_A 154_A 0.79 0.00
27_A 223_V 0.79 0.00
47_R 33_E 0.79 0.00
24_V 396_I 0.78 0.00
116_S 117_V 0.78 0.00
152_L 321_D 0.78 0.00
63_L 284_S 0.78 0.00
140_G 445_I 0.78 0.00
66_G 410_A 0.78 0.00
177_G 460_R 0.78 0.00
210_A 440_F 0.78 0.00
22_R 227_D 0.78 0.00
31_F 110_L 0.77 0.00
142_E 152_I 0.77 0.00
170_Q 229_L 0.77 0.00
63_L 410_A 0.77 0.00
88_V 216_N 0.77 0.00
97_W 223_V 0.77 0.00
32_R 208_G 0.77 0.00
75_K 93_V 0.77 0.00
106_M 121_N 0.77 0.00
82_L 356_N 0.77 0.00
208_K 461_K 0.77 0.00
40_V 185_L 0.76 0.00
10_S 390_V 0.76 0.00
122_L 32_Y 0.76 0.00
217_E 213_F 0.76 0.00
186_V 216_N 0.76 0.00
37_L 138_D 0.76 0.00
219_N 374_A 0.75 0.00
7_K 214_K 0.75 0.00
192_T 22_K 0.75 0.00
158_K 438_K 0.75 0.00
33_A 303_V 0.75 0.00
154_A 203_R 0.75 0.00
83_K 139_M 0.75 0.00
32_R 288_K 0.75 0.00
123_L 401_F 0.75 0.00
188_Q 263_F 0.75 0.00
43_E 423_I 0.75 0.00
146_L 287_G 0.75 0.00
30_S 227_D 0.74 0.00
66_G 330_R 0.74 0.00
213_L 221_R 0.74 0.00
186_V 263_F 0.74 0.00
28_A 229_L 0.74 0.00
85_H 434_T 0.74 0.00
30_S 138_D 0.74 0.00
89_V 383_V 0.74 0.00
127_A 87_T 0.74 0.00
58_K 204_E 0.74 0.00
86_Q 26_I 0.74 0.00
75_K 322_E 0.73 0.00
29_F 232_Y 0.73 0.00
13_A 203_R 0.73 0.00
189_D 260_A 0.73 0.00
184_T 235_V 0.73 0.00
119_R 159_L 0.73 0.00
42_D 280_E 0.72 0.00
146_L 174_V 0.72 0.00
135_T 356_N 0.72 0.00
73_Y 321_D 0.72 0.00
74_A 160_A 0.72 0.00
73_Y 82_E 0.72 0.00
15_T 81_A 0.72 0.00
210_A 235_V 0.72 0.00
9_T 79_E 0.72 0.00
168_V 102_R 0.72 0.00
39_V 81_A 0.72 0.00
192_T 107_S 0.72 0.00
204_F 280_E 0.72 0.00
124_T 198_V 0.72 0.00
7_K 362_V 0.72 0.00
179_T 213_F 0.72 0.00
57_E 248_G 0.71 0.00
43_E 356_N 0.71 0.00
121_I 421_R 0.71 0.00
29_F 276_E 0.71 0.00
19_Y 106_G 0.71 0.00
110_A 263_F 0.71 0.00
11_V 157_A 0.71 0.00
211_R 284_S 0.71 0.00
181_T 102_R 0.71 0.00
76_A 134_G 0.71 0.00
140_G 110_L 0.70 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.4585 seconds.