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OPENSEQ.org

FLIA - YBGI
UniProt: P0AEM6 - P0AFP6
Length: 486
Sequences: 297
Seq/Len: 0.65
I_Prob: 0.00

FLIA - RNA polymerase sigma factor for flagellar operon
Paralog alert: 0.76 [within 20: 0.08] - ratio of genomes with paralogs
Cluster includes: FLIA RPOH RPOS
YBGI - UPF0135 protein YbgI
Paralog alert: 0.04 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: YBGI
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
65_T 165_V 1.58 0.00
65_T 218_T 1.34 0.00
126_I 127_L 1.33 0.00
168_N 112_L 1.30 0.00
114_N 146_I 1.25 0.00
228_A 27_L 1.16 0.00
116_T 208_L 1.10 0.00
191_E 190_F 1.10 0.00
65_T 170_W 1.09 0.00
121_A 83_L 1.09 0.00
154_G 24_P 1.08 0.00
110_E 174_G 1.07 0.00
164_H 5_E 1.06 0.00
127_D 25_N 1.06 0.00
125_G 186_G 1.05 0.00
15_S 28_Q 1.02 0.00
124_L 60_V 1.02 0.00
175_D 223_I 1.01 0.00
129_A 47_A 1.00 0.00
171_Q 85_T 1.00 0.00
65_T 81_N 0.99 0.00
194_K 222_G 0.98 0.00
162_D 100_L 0.96 0.00
65_T 37_K 0.95 0.00
194_K 96_W 0.95 0.00
171_Q 153_K 0.92 0.00
65_T 186_G 0.92 0.00
62_L 67_F 0.91 0.00
171_Q 25_N 0.91 0.00
176_S 223_I 0.91 0.00
126_I 103_H 0.89 0.00
198_T 9_L 0.89 0.00
130_D 29_V 0.89 0.00
57_E 187_V 0.89 0.00
172_Q 209_H 0.88 0.00
59_Y 130_W 0.88 0.00
171_Q 34_T 0.88 0.00
162_D 226_L 0.88 0.00
130_D 93_L 0.87 0.00
103_A 189_A 0.87 0.00
174_L 27_L 0.87 0.00
15_S 143_A 0.87 0.00
128_I 197_E 0.87 0.00
187_E 27_L 0.86 0.00
215_E 83_L 0.85 0.00
177_N 201_H 0.84 0.00
204_E 222_G 0.84 0.00
162_D 172_T 0.84 0.00
213_V 62_V 0.83 0.00
11_M 6_L 0.83 0.00
138_T 178_F 0.83 0.00
120_V 28_Q 0.83 0.00
114_N 238_V 0.83 0.00
127_D 59_A 0.82 0.00
162_D 109_N 0.82 0.00
129_A 218_T 0.81 0.00
103_A 61_I 0.81 0.00
17_W 108_N 0.81 0.00
122_E 150_L 0.80 0.00
176_S 178_F 0.80 0.00
15_S 44_A 0.80 0.00
129_A 86_L 0.80 0.00
165_Q 220_R 0.80 0.00
61_A 58_D 0.79 0.00
215_E 62_V 0.79 0.00
110_E 10_I 0.79 0.00
103_A 2_K 0.79 0.00
126_I 138_P 0.79 0.00
165_Q 112_L 0.78 0.00
53_L 11_N 0.78 0.00
162_D 112_L 0.78 0.00
30_R 189_A 0.78 0.00
185_A 193_G 0.77 0.00
164_H 143_A 0.77 0.00
129_A 8_Q 0.77 0.00
30_R 35_V 0.77 0.00
11_M 21_D 0.77 0.00
129_A 148_A 0.77 0.00
174_L 121_M 0.77 0.00
110_E 142_L 0.76 0.00
172_Q 190_F 0.76 0.00
100_V 158_G 0.76 0.00
63_Q 38_I 0.76 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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