May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

DPPC - YIAC
UniProt: P0AEG1 - P37664
Length: 446
Sequences: 509
Seq/Len: 1.22
I_Prob: 0.00

DPPC - Dipeptide transport system permease protein DppC
Paralog alert: 0.76 [within 20: 0.11] - ratio of genomes with paralogs
Cluster includes: DDPB DDPC DPPB DPPC GSIC GSID NIKB NIKC OPPB OPPC SAPB SAPC YEJB YEJE
YIAC - Uncharacterized N-acetyltransferase YiaC
Paralog alert: 0.85 [within 20: 0.17] - ratio of genomes with paralogs
Cluster includes: ATDA PHNO RIMI RIMJ RIML YAFP YEDL YHHY YIAC YJAB YJGM YNCA YPEA
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
217_A 5_A 0.91 0.00
48_F 16_L 0.87 0.00
153_L 2_I 0.85 0.00
290_L 6_Q 0.82 0.00
192_Y 82_R 0.81 0.00
95_M 59_L 0.78 0.00
122_I 118_Q 0.75 0.00
278_L 86_G 0.74 0.00
153_L 59_L 0.74 0.00
26_F 2_I 0.73 0.00
275_A 16_L 0.72 0.00
81_L 3_R 0.71 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.7404 seconds.