May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

DPIA - RLUE
UniProt: P0AEF4 - P75966
Length: 443
Sequences: 304
Seq/Len: 0.79
I_Prob: 0.00

DPIA - Transcriptional regulatory protein DpiA
Paralog alert: 0.87 [within 20: 0.36] - ratio of genomes with paralogs
Cluster includes: ARCA BAER BASR BGLJ CPXR CREB CSGD CUSR DCUR DPIA EVGA FIMZ KDPE NARL NARP OMPR PHOB PHOP QSEB RCSB RSTA TORR UHPA UVRY YEDW YGEK YHJB
RLUE - Ribosomal large subunit pseudouridine synthase E
Paralog alert: 0.45 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RLUA RLUB RLUC RLUD RLUE RLUF RSUA TRUC
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
179_T 45_N 0.96 0.00
11_E 170_I 0.88 0.00
159_I 200_G 0.87 0.00
82_V 216_T 0.84 0.00
10_V 102_G 0.84 0.00
66_I 86_L 0.83 0.00
24_I 174_E 0.82 0.00
7_L 93_A 0.81 0.00
187_L 172_L 0.80 0.00
8_L 170_I 0.79 0.00
96_A 204_L 0.79 0.00
115_G 116_I 0.78 0.00
60_L 97_R 0.77 0.00
7_L 58_A 0.77 0.00
9_I 66_F 0.76 0.00
82_V 182_R 0.76 0.00
105_L 86_L 0.75 0.00
55_L 132_N 0.75 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.5481 seconds.