May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

DAPE - EUTG
UniProt: P0AED7 - P76553
Length: 770
Sequences: 525
Seq/Len: 0.71
I_Prob: 0.00

DAPE - Succinyl-diaminopimelate desuccinylase
Paralog alert: 0.89 [within 20: 0.19] - ratio of genomes with paralogs
Cluster includes: ABGA ABGB ALLC ARGE DAPE PEPT YGEY
EUTG - Ethanolamine utilization protein EutG
Paralog alert: 0.76 [within 20: 0.07] - ratio of genomes with paralogs
Cluster includes: ADH2 AROB EUTG FUCO GLDA YBDH YQHD
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
36_I 218_I 0.95 0.00
151_R 214_L 0.91 0.00
187_I 190_V 0.89 0.00
236_I 78_I 0.88 0.00
61_L 192_I 0.84 0.00
307_A 149_L 0.84 0.00
185_L 165_T 0.83 0.00
210_F 69_L 0.81 0.00
214_L 385_E 0.81 0.00
125_L 86_P 0.78 0.00
271_V 334_D 0.78 0.00
35_A 54_V 0.78 0.00
246_I 362_Y 0.77 0.00
313_E 382_A 0.77 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.4287 seconds.