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OPENSEQ.org

RL16 - SECY
UniProt: P0ADY7 - P0AGA2
Length: 579
Sequences: 846
Seq/Len: 1.48
I_Prob: 0.12

RL16 - 50S ribosomal protein L16
Paralog alert: 0.02 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RL16
SECY - Protein translocase subunit SecY
Paralog alert: 0.10 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: SECY
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
102_L 161_V 1.47 0.12
103_Y 329_C 1.30 0.08
100_K 189_I 1.27 0.07
28_F 372_R 1.18 0.05
80_V 63_M 1.17 0.05
6_R 68_S 1.14 0.05
88_N 293_W 1.12 0.04
114_R 235_V 1.11 0.04
112_L 272_A 1.10 0.04
88_N 272_A 1.09 0.04
7_T 421_Q 1.07 0.04
89_V 340_R 1.07 0.04
128_T 47_A 1.06 0.04
57_V 240_G 1.06 0.04
100_K 352_F 1.05 0.03
103_Y 381_I 1.05 0.03
54_T 82_I 1.04 0.03
130_F 126_V 1.03 0.03
26_V 334_A 1.02 0.03
38_R 321_Y 1.02 0.03
70_D 243_R 1.02 0.03
33_L 385_C 1.01 0.03
112_L 382_T 1.00 0.03
21_A 405_S 1.00 0.03
73_I 293_W 0.98 0.03
119_L 164_L 0.98 0.03
67_V 415_D 0.96 0.03
44_R 67_F 0.96 0.03
43_A 315_P 0.96 0.02
130_F 174_L 0.96 0.02
84_K 128_A 0.95 0.02
120_A 76_S 0.95 0.02
17_N 170_F 0.94 0.02
21_A 115_K 0.94 0.02
36_V 225_V 0.94 0.02
6_R 379_L 0.94 0.02
76_K 76_S 0.94 0.02
91_Y 96_T 0.93 0.02
54_T 229_A 0.93 0.02
131_V 23_L 0.92 0.02
26_V 111_S 0.92 0.02
84_K 44_I 0.91 0.02
79_A 163_S 0.90 0.02
119_L 406_L 0.90 0.02
76_K 33_F 0.89 0.02
106_D 413_I 0.89 0.02
78_L 370_M 0.89 0.02
133_K 419_Q 0.89 0.02
105_M 50_A 0.89 0.02
106_D 399_F 0.88 0.02
11_K 327_F 0.88 0.02
27_S 28_G 0.88 0.02
54_T 291_A 0.87 0.02
130_F 326_I 0.87 0.02
31_F 203_I 0.87 0.02
40_R 106_K 0.87 0.02
30_S 327_F 0.86 0.02
5_K 114_R 0.86 0.02
95_L 18_E 0.86 0.02
68_F 358_P 0.86 0.02
33_L 152_P 0.86 0.02
62_K 31_I 0.86 0.02
7_T 65_N 0.86 0.02
102_L 301_N 0.85 0.02
33_L 342_T 0.85 0.02
1_M 332_Y 0.85 0.02
33_L 131_Q 0.85 0.02
102_L 31_I 0.85 0.02
51_R 413_I 0.84 0.02
101_V 28_G 0.84 0.02
128_T 391_M 0.84 0.02
30_S 316_L 0.84 0.02
41_L 72_L 0.84 0.02
114_R 65_N 0.84 0.02
109_P 424_M 0.84 0.02
27_S 356_I 0.84 0.02
54_T 338_N 0.84 0.02
25_D 244_I 0.83 0.02
127_K 126_V 0.83 0.01
26_V 80_L 0.83 0.01
14_K 288_A 0.82 0.01
22_Q 275_I 0.82 0.01
73_I 75_A 0.82 0.01
57_V 264_H 0.82 0.01
89_V 325_I 0.82 0.01
58_K 168_T 0.82 0.01
100_K 44_I 0.81 0.01
62_K 275_I 0.81 0.01
43_A 120_T 0.81 0.01
12_M 183_I 0.81 0.01
62_K 413_I 0.81 0.01
14_K 399_F 0.80 0.01
42_T 71_A 0.80 0.01
130_F 41_I 0.80 0.01
131_V 301_N 0.80 0.01
136_M 3_K 0.80 0.01
57_V 163_S 0.80 0.01
98_P 83_M 0.80 0.01
101_V 387_I 0.80 0.01
57_V 23_L 0.80 0.01
26_V 189_I 0.80 0.01
74_T 157_Y 0.80 0.01
26_V 148_L 0.80 0.01
26_V 272_A 0.80 0.01
76_K 194_G 0.80 0.01
14_K 238_E 0.79 0.01
112_L 130_F 0.79 0.01
110_E 306_I 0.79 0.01
110_E 39_I 0.79 0.01
48_A 309_Y 0.78 0.01
26_V 339_P 0.78 0.01
63_I 321_Y 0.78 0.01
84_K 156_F 0.78 0.01
109_P 51_K 0.78 0.01
40_R 150_I 0.78 0.01
89_V 236_F 0.78 0.01
27_S 292_S 0.78 0.01
30_S 75_A 0.78 0.01
130_F 342_T 0.77 0.01
121_A 366_I 0.77 0.01
54_T 365_Y 0.77 0.01
17_N 312_P 0.77 0.01
13_H 305_T 0.77 0.01
79_A 424_M 0.76 0.01
127_K 228_F 0.76 0.01
48_A 41_I 0.76 0.01
80_V 341_E 0.76 0.01
70_D 108_E 0.76 0.01
51_R 153_G 0.76 0.01
110_E 116_I 0.76 0.01
89_V 171_L 0.76 0.01
131_V 133_I 0.76 0.01
11_K 168_T 0.76 0.01
74_T 54_E 0.76 0.01
100_K 265_L 0.76 0.01
89_V 370_M 0.76 0.01
78_L 76_S 0.75 0.01
118_K 99_H 0.75 0.01
75_E 49_L 0.75 0.01
101_V 309_Y 0.75 0.01
119_L 179_T 0.75 0.01
53_M 267_L 0.75 0.01
57_V 159_T 0.75 0.01
38_R 235_V 0.75 0.01
111_E 47_A 0.75 0.01
16_R 221_L 0.75 0.01
80_V 413_I 0.75 0.01
128_T 166_T 0.74 0.01
53_M 45_D 0.74 0.01
43_A 335_L 0.74 0.01
3_Q 87_S 0.74 0.01
102_L 325_I 0.74 0.01
89_V 338_N 0.74 0.01
41_L 283_I 0.74 0.01
72_P 369_V 0.74 0.01
51_R 403_G 0.74 0.01
51_R 106_K 0.74 0.01
129_T 351_A 0.73 0.01
101_V 384_I 0.73 0.01
89_V 250_K 0.73 0.01
36_V 306_I 0.73 0.01
102_L 154_F 0.73 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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