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OPENSEQ.org

DBHB - YBAO
UniProt: P0ACF4 - P0ACJ5
Length: 242
Sequences: 188
Seq/Len: 0.78
I_Prob: 0.00

DBHB - DNA-binding protein HU-beta
Paralog alert: 0.56 [within 20: 0.04] - ratio of genomes with paralogs
Cluster includes: DBHA DBHB IHFA IHFB
YBAO - Uncharacterized HTH-type transcriptional regulator YbaO
Paralog alert: 0.82 [within 20: 0.14] - ratio of genomes with paralogs
Cluster includes: ASNC LRP YBAO
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
3_K 44_D 1.37 0.00
5_Q 80_Y 1.36 0.00
44_L 55_L 1.17 0.00
11_A 18_T 1.01 0.00
51_A 10_L 0.99 0.00
71_I 136_S 0.98 0.00
32_V 92_E 0.95 0.00
54_E 88_T 0.94 0.00
21_A 61_G 0.93 0.00
11_A 93_V 0.93 0.00
80_R 29_N 0.91 0.00
13_G 105_Y 0.91 0.00
32_V 68_V 0.90 0.00
51_A 113_D 0.90 0.00
82_G 59_K 0.88 0.00
57_A 56_D 0.88 0.00
3_K 149_L 0.85 0.00
44_L 63_G 0.84 0.00
19_A 118_D 0.84 0.00
9_K 16_D 0.83 0.00
8_D 31_T 0.82 0.00
38_E 68_V 0.81 0.00
85_L 87_V 0.81 0.00
32_V 20_S 0.81 0.00
73_A 87_V 0.80 0.00
38_E 144_K 0.79 0.00
77_P 64_L 0.79 0.00
42_V 93_V 0.79 0.00
28_I 56_D 0.79 0.00
89_V 20_S 0.79 0.00
64_Q 116_R 0.79 0.00
30_A 19_L 0.78 0.00
41_D 24_L 0.78 0.00
5_Q 71_K 0.77 0.00
25_L 120_F 0.77 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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