May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

YGFA - ZAPA
UniProt: P0AC28 - P0ADS2
Length: 291
Sequences: 187
Seq/Len: 0.65
I_Prob: 0.00

YGFA - Uncharacterized protein YgfA
Paralog alert: 0.02 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: YGFA
ZAPA - Cell division protein ZapA
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: ZAPA
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
149_V 24_R 1.43 0.00
149_V 8_I 1.32 0.00
127_L 30_A 1.27 0.00
139_Q 28_N 1.26 0.00
68_L 67_Q 1.24 0.00
86_E 8_I 1.16 0.00
149_V 62_S 1.13 0.00
172_A 61_I 1.13 0.00
176_P 38_L 1.13 0.00
1_M 101_T 1.10 0.00
106_P 64_E 1.10 0.00
173_V 70_A 1.09 0.00
168_I 69_K 1.09 0.00
110_L 65_L 1.09 0.00
106_P 93_A 1.08 0.00
165_E 30_A 1.07 0.00
170_L 19_C 1.07 0.00
60_G 25_D 1.06 0.00
175_T 17_V 1.06 0.00
51_P 74_D 1.04 0.00
52_L 16_R 1.04 0.00
113_L 104_T 1.04 0.00
60_G 102_E 1.03 0.00
113_L 29_Q 1.03 0.00
61_K 10_I 1.03 0.00
106_P 86_L 1.03 0.00
87_L 24_R 1.02 0.00
113_L 105_N 1.02 0.00
95_H 101_T 1.02 0.00
93_K 57_A 1.02 0.00
18_G 103_K 1.01 0.00
87_L 64_E 1.01 0.00
40_F 35_N 1.01 0.00
74_G 24_R 1.00 0.00
101_V 42_K 1.00 0.00
98_K 69_K 0.99 0.00
124_G 20_P 0.99 0.00
171_P 52_Q 0.99 0.00
147_Q 69_K 0.98 0.00
60_G 105_N 0.97 0.00
59_A 104_T 0.97 0.00
56_L 41_L 0.95 0.00
49_T 45_T 0.95 0.00
137_T 17_V 0.95 0.00
175_T 53_L 0.95 0.00
22_A 34_L 0.93 0.00
169_P 31_A 0.93 0.00
11_P 53_L 0.93 0.00
68_L 75_Y 0.93 0.00
2_I 101_T 0.93 0.00
36_T 20_P 0.92 0.00
40_F 103_K 0.92 0.00
98_K 63_Y 0.92 0.00
173_V 32_D 0.92 0.00
36_T 91_E 0.91 0.00
68_L 91_E 0.91 0.00
41_L 20_P 0.90 0.00
64_Y 59_L 0.90 0.00
119_A 68_E 0.90 0.00
106_P 17_V 0.90 0.00
102_R 92_Q 0.90 0.00
176_P 7_D 0.90 0.00
17_M 46_R 0.90 0.00
64_Y 20_P 0.89 0.00
40_F 24_R 0.89 0.00
108_S 104_T 0.89 0.00
92_L 11_F 0.89 0.00
19_Q 8_I 0.89 0.00
36_T 35_N 0.89 0.00
118_V 60_N 0.89 0.00
177_S 94_L 0.89 0.00
47_L 96_E 0.88 0.00
52_L 57_A 0.88 0.00
119_A 72_T 0.88 0.00
129_M 60_N 0.87 0.00
64_Y 65_L 0.87 0.00
139_Q 15_L 0.87 0.00
87_L 8_I 0.87 0.00
44_D 65_L 0.86 0.00
25_M 69_K 0.86 0.00
48_D 13_R 0.86 0.00
101_V 83_I 0.86 0.00
115_T 22_D 0.85 0.00
92_L 94_L 0.85 0.00
103_D 63_Y 0.85 0.00
149_V 25_D 0.85 0.00
97_P 1_M 0.85 0.00
151_Y 63_Y 0.85 0.00
67_V 37_R 0.85 0.00
33_M 32_D 0.84 0.00
40_F 104_T 0.84 0.00
67_V 55_F 0.84 0.00
98_K 105_N 0.84 0.00
127_L 40_D 0.84 0.00
45_G 31_A 0.84 0.00
44_D 44_R 0.84 0.00
145_K 43_E 0.83 0.00
177_S 33_D 0.83 0.00
133_F 5_P 0.83 0.00
52_L 69_K 0.82 0.00
145_K 104_T 0.82 0.00
75_N 41_L 0.82 0.00
65_L 26_A 0.82 0.00
112_V 42_K 0.82 0.00
15_Q 35_N 0.82 0.00
25_M 24_R 0.82 0.00
148_P 44_R 0.81 0.00
39_V 78_S 0.81 0.00
55_Q 24_R 0.81 0.00
101_V 71_K 0.81 0.00
114_I 57_A 0.81 0.00
56_L 90_I 0.81 0.00
164_E 101_T 0.80 0.00
180_W 40_D 0.80 0.00
115_T 12_G 0.80 0.00
24_R 8_I 0.80 0.00
113_L 77_A 0.80 0.00
115_T 54_V 0.80 0.00
47_L 57_A 0.80 0.00
53_I 18_N 0.80 0.00
59_A 105_N 0.79 0.00
152_A 57_A 0.79 0.00
75_N 99_R 0.79 0.00
35_H 56_I 0.79 0.00
113_L 54_V 0.79 0.00
4_Q 73_R 0.79 0.00
61_K 13_R 0.79 0.00
56_L 86_L 0.79 0.00
127_L 8_I 0.79 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 1.2919 seconds.