May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

DHPS - YHBY
UniProt: P0AC13 - P0AGK4
Length: 379
Sequences: 272
Seq/Len: 0.74
I_Prob: 0.00

DHPS - Dihydropteroate synthase
Paralog alert: 0.13 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: DHPS
YHBY - RNA-binding protein YhbY
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: YHBY
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
141_M 33_V 1.42 0.00
256_V 56_R 1.39 0.00
117_I 53_T 1.29 0.00
238_G 85_Y 1.27 0.00
184_L 40_A 1.27 0.00
119_S 13_G 1.25 0.00
114_I 35_A 1.15 0.00
20_I 13_G 1.13 0.00
106_S 84_L 1.12 0.00
264_E 63_V 1.12 0.00
33_T 90_E 1.11 0.00
57_V 72_A 1.09 0.00
40_A 19_K 1.07 0.00
268_V 24_L 1.05 0.00
207_F 61_L 1.05 0.00
86_A 23_L 1.04 0.00
172_C 12_K 1.04 0.00
20_I 30_T 1.03 0.00
244_V 73_C 1.02 0.00
247_A 57_E 1.01 0.00
117_I 73_C 1.01 0.00
141_M 22_V 0.99 0.00
66_A 9_Q 0.98 0.00
109_V 11_L 0.98 0.00
178_A 4_S 0.95 0.00
235_R 24_L 0.94 0.00
30_D 25_G 0.93 0.00
173_E 42_E 0.92 0.00
208_H 38_E 0.92 0.00
172_C 8_K 0.92 0.00
244_V 38_E 0.91 0.00
191_G 22_V 0.91 0.00
248_M 57_E 0.91 0.00
238_G 49_V 0.90 0.00
270_E 49_V 0.89 0.00
191_G 92_K 0.89 0.00
85_I 11_L 0.89 0.00
113_I 64_E 0.89 0.00
89_F 66_I 0.88 0.00
99_K 15_A 0.88 0.00
225_G 24_L 0.87 0.00
46_L 38_E 0.87 0.00
229_N 73_C 0.86 0.00
261_E 57_E 0.86 0.00
240_L 64_E 0.85 0.00
247_A 15_A 0.84 0.00
261_E 2_N 0.83 0.00
82_V 5_T 0.83 0.00
194_L 24_L 0.83 0.00
68_E 12_K 0.83 0.00
141_M 29_L 0.83 0.00
236_L 1_M 0.83 0.00
85_I 53_T 0.82 0.00
235_R 32_G 0.81 0.00
16_H 67_V 0.81 0.00
52_A 42_E 0.81 0.00
99_K 96_P 0.80 0.00
172_C 85_Y 0.80 0.00
52_A 39_Q 0.80 0.00
112_H 23_L 0.79 0.00
39_D 95_L 0.79 0.00
165_F 24_L 0.79 0.00
137_C 86_R 0.79 0.00
12_L 45_E 0.79 0.00
225_G 32_G 0.79 0.00
31_G 25_G 0.78 0.00
227_L 24_L 0.78 0.00
103_I 86_R 0.78 0.00
256_V 80_K 0.78 0.00
91_V 10_H 0.78 0.00
224_I 63_V 0.77 0.00
229_N 59_K 0.77 0.00
200_L 29_L 0.77 0.00
91_V 67_V 0.77 0.00
122_E 14_L 0.77 0.00
188_F 11_L 0.76 0.00
99_K 43_H 0.76 0.00
92_W 12_K 0.76 0.00
165_F 49_V 0.76 0.00
256_V 27_N 0.76 0.00
248_M 75_V 0.75 0.00
251_A 56_R 0.75 0.00
90_E 31_E 0.75 0.00
37_L 97_R 0.75 0.00
10_L 49_V 0.74 0.00
103_I 44_H 0.74 0.00
226_Q 24_L 0.74 0.00
52_A 32_G 0.74 0.00
191_G 15_A 0.74 0.00
144_N 31_E 0.74 0.00
127_E 55_D 0.74 0.00
68_E 59_K 0.74 0.00
100_P 74_N 0.73 0.00
273_L 75_V 0.73 0.00
111_A 19_K 0.73 0.00
66_A 31_E 0.73 0.00
99_K 93_I 0.73 0.00
55_I 13_G 0.73 0.00
204_L 11_L 0.72 0.00
113_I 81_T 0.72 0.00
258_D 56_R 0.72 0.00
123_P 24_L 0.72 0.00
237_S 23_L 0.72 0.00
95_V 32_G 0.72 0.00
99_K 11_L 0.72 0.00
249_Q 87_P 0.71 0.00
79_I 53_T 0.71 0.00
50_A 2_N 0.71 0.00
214_L 17_P 0.71 0.00
165_F 42_E 0.71 0.00
99_K 14_L 0.71 0.00
223_M 66_I 0.71 0.00
172_C 27_N 0.71 0.00
127_E 49_V 0.70 0.00
154_Y 67_V 0.70 0.00
242_C 91_R 0.70 0.00
43_H 12_K 0.70 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.627 seconds.