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OPENSEQ.org
CYOC - NUOM
UniProt: P0ABJ3 - P0AFE8
Length: 713
Sequences: 1082
Seq/Len: 1.85
I_Prob: 0.59
CYOC - Cytochrome o ubiquinol oxidase subunit 3
Paralog alert: 0.19 [within 20: 0.04] - ratio of genomes with paralogs
Cluster includes: CYOC 		NUOM - NADH-quinone oxidoreductase subunit M
Paralog alert: 0.74 [within 20: 0.56] - ratio of genomes with paralogs
Cluster includes: HYCC HYFB HYFD HYFF NUOL NUOM NUON
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
50_L 429_L 1.60 0.59
196_T 342_V 1.53 0.54
90_M 481_Y 1.46 0.47
133_S 116_F 1.43 0.45
92_K 394_A 1.37 0.39
56_G 181_S 1.32 0.35
97_Q 446_G 1.27 0.31
48_A 459_G 1.27 0.31
158_A 431_F 1.22 0.27
129_G 299_F 1.22 0.27
154_L 396_L 1.20 0.25
196_T 116_F 1.19 0.24
131_D 447_K 1.19 0.24
107_L 221_Y 1.17 0.23
137_S 302_A 1.13 0.21
101_W 419_P 1.13 0.20
41_S 191_A 1.11 0.19
65_E 442_R 1.10 0.19
83_Y 392_A 1.09 0.18
159_V 225_L 1.09 0.18
159_V 442_R 1.07 0.17
114_G 409_M 1.07 0.17
110_A 109_I 1.04 0.15
158_A 187_I 1.02 0.14
131_D 477_L 1.02 0.14
196_T 275_S 1.02 0.14
38_I 371_M 1.02 0.14
90_M 192_L 1.01 0.14
196_T 153_L 0.99 0.13
131_D 102_V 0.99 0.13
133_S 110_E 0.99 0.13
38_I 253_T 0.99 0.13
172_T 302_A 0.98 0.12
48_A 123_I 0.98 0.12
121_H 190_L 0.97 0.12
166_R 209_E 0.97 0.12
65_E 392_A 0.97 0.12
166_R 208_E 0.96 0.12
49_V 330_I 0.96 0.11
133_S 200_T 0.96 0.11
49_V 119_N 0.96 0.11
37_C 125_G 0.96 0.11
83_Y 366_I 0.95 0.11
117_I 448_A 0.95 0.11
134_G 180_A 0.95 0.11
34_M 228_F 0.95 0.11
114_G 392_A 0.95 0.11
166_R 275_S 0.94 0.10
101_W 240_L 0.94 0.10
65_E 447_K 0.93 0.10
114_G 198_N 0.93 0.10
90_M 431_F 0.93 0.10
195_F 292_W 0.93 0.10
171_S 446_G 0.93 0.10
172_T 277_P 0.93 0.10
131_D 402_G 0.93 0.10
93_N 368_T 0.92 0.10
65_E 285_E 0.91 0.09
133_S 361_Q 0.91 0.09
103_A 285_E 0.91 0.09
49_V 271_L 0.90 0.09
166_R 217_S 0.90 0.09
74_F 475_L 0.90 0.09
55_A 421_I 0.90 0.09
137_S 456_E 0.90 0.09
155_I 351_S 0.90 0.09
94_N 328_I 0.90 0.09
188_D 234_K 0.89 0.09
134_G 116_F 0.89 0.08
24_T 438_A 0.89 0.08
49_V 126_G 0.88 0.08
83_Y 475_L 0.88 0.08
38_I 91_V 0.87 0.08
117_I 288_P 0.87 0.08
158_A 381_M 0.87 0.08
133_S 432_A 0.87 0.08
137_S 446_G 0.87 0.08
133_S 379_S 0.86 0.07
75_L 133_A 0.86 0.07
103_A 412_F 0.86 0.07
74_F 100_L 0.86 0.07
90_M 339_Q 0.86 0.07
114_G 471_L 0.86 0.07
94_N 207_Y 0.86 0.07
65_E 436_S 0.85 0.07
49_V 471_L 0.85 0.07
107_L 125_G 0.85 0.07
101_W 470_L 0.85 0.07
98_V 339_Q 0.85 0.07
172_T 110_E 0.84 0.07
134_G 433_S 0.84 0.07
165_A 303_W 0.84 0.07
89_A 203_W 0.84 0.07
131_D 394_A 0.84 0.07
162_V 478_L 0.84 0.07
196_T 471_L 0.83 0.07
166_R 211_L 0.83 0.07
117_I 457_L 0.83 0.07
114_G 211_L 0.83 0.07
107_L 289_I 0.83 0.07
65_E 82_A 0.83 0.07
97_Q 431_F 0.82 0.07
114_G 458_P 0.82 0.06
126_N 386_A 0.82 0.06
38_I 185_M 0.82 0.06
151_T 157_W 0.82 0.06
90_M 271_L 0.82 0.06
103_A 275_S 0.82 0.06
137_S 239_P 0.82 0.06
158_A 210_L 0.82 0.06
77_L 80_H 0.81 0.06
50_L 275_S 0.81 0.06
62_D 141_F 0.81 0.06
107_L 216_S 0.81 0.06
96_S 102_V 0.81 0.06
134_G 286_F 0.81 0.06
110_A 398_M 0.81 0.06
110_A 439_M 0.81 0.06
114_G 281_N 0.81 0.06
114_G 217_S 0.81 0.06
103_A 377_L 0.81 0.06
67_P 428_G 0.80 0.06
162_V 81_L 0.80 0.06
82_T 328_I 0.80 0.06
96_S 276_L 0.80 0.06
196_T 453_A 0.80 0.06
101_W 379_S 0.80 0.06
131_D 351_S 0.80 0.06
53_G 341_A 0.80 0.06
48_A 343_I 0.80 0.06
95_K 361_Q 0.80 0.06
137_S 135_D 0.79 0.06
91_Y 278_L 0.79 0.06
167_R 440_L 0.79 0.06
48_A 321_S 0.79 0.06
83_Y 414_S 0.79 0.06
101_W 138_L 0.79 0.06
41_S 118_L 0.79 0.05
103_A 81_L 0.79 0.05
93_N 447_K 0.79 0.05
83_Y 298_I 0.78 0.05
134_G 183_L 0.78 0.05
107_L 379_S 0.78 0.05
62_D 278_L 0.78 0.05
104_L 295_V 0.78 0.05
75_L 125_G 0.78 0.05
30_W 274_F 0.78 0.05
172_T 478_L 0.78 0.05
75_L 204_T 0.78 0.05
165_A 414_S 0.78 0.05
65_E 191_A 0.78 0.05
196_T 448_A 0.78 0.05
117_I 372_R 0.78 0.05
165_A 458_P 0.77 0.05
94_N 110_E 0.77 0.05
172_T 275_S 0.77 0.05
134_G 374_M 0.77 0.05
103_A 214_P 0.77 0.05
165_A 285_E 0.77 0.05
166_R 331_Y 0.77 0.05
158_A 419_P 0.77 0.05
41_S 475_L 0.77 0.05
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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