May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
CDSA - RS2
UniProt: P0ABG1 - P0A7V0
Length: 526
Sequences: 834
Seq/Len: 1.67
I_Prob: 0.52
CDSA - Phosphatidate cytidylyltransferase
Paralog alert: 0.03 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: CDSA YNBB 		RS2 - 30S ribosomal protein S2
Paralog alert: 0.02 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: RS2
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
268_T 92_V 1.62 0.52
251_G 129_L 1.53 0.45
181_A 100_M 1.33 0.29
138_L 177_N 1.30 0.27
37_M 30_F 1.30 0.26
197_L 146_N 1.26 0.24
190_W 146_N 1.26 0.24
184_V 94_H 1.24 0.22
158_M 138_T 1.19 0.19
215_V 164_I 1.19 0.19
222_I 163_V 1.18 0.19
34_V 142_E 1.18 0.19
251_G 184_F 1.17 0.18
202_V 80_V 1.16 0.18
157_V 163_V 1.15 0.17
126_L 145_E 1.13 0.16
190_W 153_D 1.12 0.16
67_A 184_F 1.12 0.15
189_T 185_A 1.12 0.15
231_S 183_V 1.12 0.15
189_T 221_V 1.10 0.15
271_V 143_K 1.06 0.13
107_P 129_L 1.06 0.12
12_L 139_R 1.05 0.12
162_W 93_N 1.02 0.11
182_P 78_E 1.02 0.11
170_M 45_K 1.01 0.11
241_F 55_A 1.01 0.11
31_V 173_I 1.01 0.10
104_L 90_F 1.00 0.10
189_T 104_W 0.99 0.10
137_A 173_I 0.99 0.10
157_V 173_I 0.98 0.10
254_I 209_A 0.97 0.09
49_F 30_F 0.96 0.09
268_T 171_I 0.96 0.09
187_G 171_I 0.96 0.09
94_G 78_E 0.96 0.09
164_A 147_S 0.96 0.09
15_V 8_D 0.96 0.09
272_P 115_K 0.95 0.08
266_S 55_A 0.95 0.08
191_Q 164_I 0.95 0.08
107_P 100_M 0.94 0.08
139_R 89_Q 0.94 0.08
189_T 57_L 0.94 0.08
138_L 152_K 0.94 0.08
232_V 42_N 0.94 0.08
189_T 227_Q 0.94 0.08
274_F 224_G 0.94 0.08
184_V 178_N 0.92 0.07
18_A 198_F 0.92 0.07
271_V 100_M 0.92 0.07
269_A 48_P 0.91 0.07
93_L 153_D 0.91 0.07
125_V 119_T 0.90 0.07
204_S 141_L 0.90 0.07
218_V 91_F 0.90 0.07
134_G 213_Y 0.90 0.07
230_A 173_I 0.90 0.07
264_I 9_M 0.89 0.07
253_L 53_A 0.88 0.06
260_I 129_L 0.88 0.06
226_V 78_E 0.88 0.06
207_Y 187_V 0.88 0.06
17_I 91_F 0.88 0.06
178_H 85_L 0.88 0.06
205_W 61_A 0.88 0.06
53_S 80_V 0.87 0.06
24_P 107_V 0.87 0.06
170_M 198_F 0.86 0.06
233_L 9_M 0.85 0.06
224_S 159_D 0.85 0.06
158_M 146_N 0.85 0.06
201_A 200_I 0.85 0.06
177_K 41_I 0.84 0.05
49_F 163_V 0.84 0.05
103_V 125_T 0.84 0.05
127_T 22_Y 0.84 0.05
278_L 153_D 0.83 0.05
227_A 79_A 0.83 0.05
123_F 28_K 0.83 0.05
43_W 39_H 0.83 0.05
135_M 58_N 0.83 0.05
268_T 156_G 0.83 0.05
21_F 78_E 0.83 0.05
26_V 80_V 0.83 0.05
4_Y 187_V 0.82 0.05
95_W 163_V 0.82 0.05
30_I 127_D 0.82 0.05
170_M 94_H 0.82 0.05
181_A 90_F 0.82 0.05
58_L 12_A 0.82 0.05
131_F 194_D 0.82 0.05
183_K 67_I 0.82 0.05
202_V 91_F 0.82 0.05
135_M 63_R 0.82 0.05
133_W 173_I 0.81 0.05
264_I 217_V 0.81 0.05
138_L 183_V 0.81 0.05
241_F 46_T 0.81 0.05
231_S 198_F 0.81 0.05
158_M 211_T 0.81 0.05
204_S 184_F 0.81 0.05
139_R 93_N 0.81 0.05
75_E 211_T 0.81 0.04
247_I 160_A 0.81 0.04
16_V 217_V 0.81 0.04
157_V 30_F 0.80 0.04
247_I 189_T 0.80 0.04
14_P 157_L 0.80 0.04
170_M 180_G 0.80 0.04
88_S 185_A 0.80 0.04
224_S 224_G 0.80 0.04
100_L 198_F 0.80 0.04
244_E 107_V 0.80 0.04
41_W 139_R 0.79 0.04
28_F 28_K 0.79 0.04
130_P 129_L 0.79 0.04
275_A 156_G 0.79 0.04
184_V 34_A 0.79 0.04
43_W 48_P 0.79 0.04
61_L 80_V 0.79 0.04
152_I 78_E 0.79 0.04
16_V 7_R 0.79 0.04
52_R 45_K 0.79 0.04
66_L 78_E 0.79 0.04
178_H 216_A 0.79 0.04
35_V 177_N 0.78 0.04
138_L 118_E 0.78 0.04
119_L 143_K 0.78 0.04
13_I 93_N 0.78 0.04
100_L 62_S 0.78 0.04
160_L 80_V 0.78 0.04
151_A 41_I 0.78 0.04
30_I 112_K 0.77 0.04
270_A 171_I 0.77 0.04
161_V 107_V 0.77 0.04
268_T 173_I 0.77 0.04
99_A 183_V 0.77 0.04
92_S 80_V 0.77 0.04
180_L 12_A 0.77 0.04
193_F 213_Y 0.77 0.04
266_S 34_A 0.76 0.04
167_G 142_E 0.76 0.04
127_T 9_M 0.76 0.04
194_I 185_A 0.76 0.04
127_T 42_N 0.76 0.04
70_L 222_R 0.76 0.04
61_L 81_K 0.75 0.04
36_C 57_L 0.75 0.04
71_F 5_S 0.75 0.04
195_G 113_R 0.75 0.04
260_I 174_K 0.75 0.04
124_G 135_L 0.75 0.04
141_W 30_F 0.75 0.04
254_I 114_L 0.75 0.04
229_L 198_F 0.75 0.04
118_T 91_F 0.75 0.03
180_L 4_V 0.75 0.03
14_P 87_C 0.74 0.03
251_G 81_K 0.74 0.03
139_R 216_A 0.74 0.03
153_W 69_F 0.74 0.03
52_R 80_V 0.74 0.03
240_M 108_R 0.74 0.03
30_I 163_V 0.74 0.03
77_H 185_A 0.74 0.03
174_L 160_A 0.74 0.03
34_V 174_K 0.73 0.03
92_S 119_T 0.73 0.03
193_F 94_H 0.73 0.03
8_S 158_P 0.73 0.03
103_V 218_A 0.73 0.03
18_A 217_V 0.73 0.03
148_Y 124_G 0.73 0.03
261_L 221_V 0.73 0.03
94_G 67_I 0.72 0.03
43_W 213_Y 0.72 0.03
260_I 223_E 0.72 0.03
20_L 180_G 0.72 0.03
132_F 21_R 0.72 0.03
130_P 107_V 0.72 0.03
132_F 37_K 0.72 0.03
113_W 163_V 0.72 0.03
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.8835 seconds.