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OPENSEQ.org
ATPA - ATPD
UniProt: P0ABB0 - P0ABA4
Length: 690
Sequences: 1164
Seq/Len: 1.69
I_Prob: 0.90
ATPA - ATP synthase subunit alpha
Paralog alert: 0.61 [within 20: 0.32] - ratio of genomes with paralogs
Cluster includes: ATPA ATPB FLII 		ATPD - ATP synthase subunit delta
Paralog alert: 0.02 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: ATPD
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
19_F 82_E 1.90 0.90
45_A 157_D 1.53 0.70
369_N 50_G 1.23 0.42
13_K 17_D 1.22 0.41
17_A 22_H 1.21 0.40
7_E 85_R 1.10 0.29
12_I 162_G 1.05 0.25
13_K 21_E 1.01 0.22
368_V 111_V 1.01 0.22
70_S 133_L 1.00 0.21
461_L 116_A 0.97 0.19
47_C 96_F 0.97 0.19
126_F 151_V 0.95 0.17
394_R 157_D 0.95 0.17
495_E 143_I 0.92 0.15
272_Q 10_P 0.90 0.14
23_S 167_R 0.88 0.13
244_A 63_A 0.87 0.13
301_A 64_V 0.86 0.12
397_L 159_V 0.85 0.12
490_G 147_V 0.85 0.11
136_V 51_A 0.83 0.11
89_K 116_A 0.82 0.10
90_C 10_P 0.82 0.10
76_M 157_D 0.81 0.10
246_G 147_V 0.81 0.09
455_Y 148_M 0.80 0.09
436_Y 28_W 0.80 0.09
364_I 76_L 0.79 0.09
218_L 76_L 0.79 0.09
13_K 16_F 0.78 0.08
155_S 164_V 0.77 0.08
404_A 114_A 0.77 0.08
140_Q 53_A 0.76 0.07
38_V 84_G 0.76 0.07
45_A 167_R 0.76 0.07
47_C 105_A 0.76 0.07
219_A 37_E 0.75 0.07
451_A 157_D 0.75 0.07
276_L 159_V 0.75 0.07
136_V 159_V 0.75 0.07
368_V 164_V 0.74 0.07
400_Y 69_L 0.74 0.07
358_N 83_N 0.74 0.07
15_R 63_A 0.73 0.07
16_I 171_L 0.73 0.07
42_H 50_G 0.73 0.06
123_H 116_A 0.72 0.06
415_D 58_A 0.72 0.06
511_Q 15_A 0.72 0.06
188_D 16_F 0.72 0.06
237_L 126_S 0.71 0.06
83_A 76_L 0.71 0.06
259_I 46_E 0.71 0.06
410_A 147_V 0.71 0.06
218_L 170_R 0.71 0.06
370_P 132_R 0.70 0.06
335_G 61_F 0.70 0.06
240_Y 121_Q 0.70 0.06
129_V 164_V 0.70 0.06
330_I 18_F 0.69 0.05
435_Q 159_V 0.69 0.05
94_I 164_V 0.69 0.05
213_E 175_L 0.69 0.05
41_I 153_I 0.69 0.05
53_I 60_S 0.69 0.05
10_E 31_M 0.69 0.05
24_E 76_L 0.68 0.05
258_I 129_M 0.68 0.05
155_S 84_G 0.68 0.05
68_R 133_L 0.68 0.05
204_T 166_G 0.68 0.05
6_T 83_N 0.67 0.05
136_V 148_M 0.67 0.05
178_L 105_A 0.67 0.05
218_L 118_S 0.67 0.05
5_S 67_E 0.67 0.05
103_L 77_I 0.67 0.05
180_I 122_L 0.67 0.05
418_R 157_D 0.67 0.05
157_I 135_R 0.67 0.05
71_V 113_S 0.67 0.05
32_V 51_A 0.67 0.05
390_S 122_L 0.67 0.05
1_M 21_E 0.67 0.05
94_I 8_A 0.67 0.05
417_T 96_F 0.67 0.05
358_N 145_K 0.66 0.05
13_K 167_R 0.66 0.05
87_K 165_R 0.66 0.05
194_I 95_Q 0.66 0.05
128_A 167_R 0.66 0.04
425_Q 7_V 0.66 0.04
223_V 119_E 0.65 0.04
408_Q 86_L 0.65 0.04
141_S 53_A 0.65 0.04
494_D 57_L 0.65 0.04
418_R 60_S 0.65 0.04
155_S 54_P 0.65 0.04
3_L 4_F 0.65 0.04
354_F 19_A 0.65 0.04
448_L 25_V 0.64 0.04
428_T 164_V 0.64 0.04
359_L 79_V 0.64 0.04
225_V 121_Q 0.64 0.04
177_A 159_V 0.64 0.04
250_R 65_C 0.64 0.04
447_V 109_V 0.64 0.04
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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