May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

YBHP - YCBL
UniProt: P0AAW1 - P75849
Length: 468
Sequences: 293
Seq/Len: 0.65
I_Prob: 0.01

YBHP - Uncharacterized protein YbhP
Paralog alert: 0.76 [within 20: 0.03] - ratio of genomes with paralogs
Cluster includes: EX3 YAFD YBHP
YCBL - Uncharacterized protein YcbL
Paralog alert: 0.71 [within 20: 0.06] - ratio of genomes with paralogs
Cluster includes: GLO2 YCBL
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
207_T 46_G 1.61 0.01
172_V 184_D 1.36 0.00
43_D 42_V 1.33 0.00
41_S 109_R 1.26 0.00
45_V 40_Q 1.24 0.00
100_S 197_T 1.24 0.00
47_L 139_F 1.18 0.00
44_I 53_L 1.15 0.00
82_A 29_V 1.14 0.00
247_L 73_G 1.13 0.00
13_L 210_D 1.09 0.00
138_V 147_L 1.05 0.00
10_F 138_V 1.04 0.00
207_T 109_R 1.02 0.00
157_L 139_F 1.01 0.00
43_D 18_I 1.00 0.00
44_I 184_D 0.99 0.00
79_S 54_L 0.98 0.00
172_V 161_S 0.98 0.00
247_L 45_S 0.98 0.00
155_A 68_L 0.97 0.00
43_D 47_L 0.96 0.00
125_C 117_I 0.96 0.00
33_L 178_K 0.95 0.00
25_N 161_S 0.95 0.00
128_V 72_Y 0.94 0.00
229_A 139_F 0.92 0.00
126_R 197_T 0.92 0.00
35_D 175_I 0.90 0.00
133_G 36_E 0.90 0.00
223_K 76_V 0.89 0.00
138_V 35_A 0.89 0.00
195_E 185_D 0.88 0.00
74_A 169_N 0.87 0.00
221_Y 69_A 0.86 0.00
37_V 37_K 0.86 0.00
73_L 44_D 0.86 0.00
138_V 65_A 0.86 0.00
9_S 179_L 0.86 0.00
253_L 52_I 0.85 0.00
12_V 48_T 0.85 0.00
157_L 38_I 0.85 0.00
10_F 48_T 0.85 0.00
12_V 181_P 0.84 0.00
103_P 172_I 0.83 0.00
43_D 210_D 0.83 0.00
126_R 50_M 0.83 0.00
100_S 43_D 0.83 0.00
35_D 46_G 0.83 0.00
42_A 50_M 0.82 0.00
31_P 175_I 0.82 0.00
172_V 23_T 0.82 0.00
78_W 120_G 0.82 0.00
77_M 117_I 0.82 0.00
161_V 161_S 0.82 0.00
44_I 18_I 0.82 0.00
129_P 117_I 0.82 0.00
135_A 115_D 0.82 0.00
197_F 157_G 0.81 0.00
10_F 46_G 0.81 0.00
9_S 116_T 0.81 0.00
24_F 23_T 0.81 0.00
195_E 70_Q 0.81 0.00
135_A 50_M 0.81 0.00
50_V 76_V 0.81 0.00
12_V 125_Q 0.80 0.00
43_D 129_C 0.80 0.00
32_E 40_Q 0.80 0.00
250_E 49_L 0.80 0.00
123_L 155_K 0.80 0.00
195_E 80_E 0.80 0.00
43_D 156_G 0.80 0.00
171_L 148_I 0.80 0.00
104_I 27_A 0.79 0.00
159_E 200_Y 0.79 0.00
184_N 80_E 0.79 0.00
100_S 21_E 0.79 0.00
9_S 188_F 0.79 0.00
44_I 188_F 0.78 0.00
35_D 129_C 0.78 0.00
43_D 6_I 0.77 0.00
252_H 115_D 0.77 0.00
229_A 25_L 0.77 0.00
227_A 121_N 0.77 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 1.0903 seconds.