May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

IOJAP - NADD
UniProt: P0AAT6 - P0A752
Length: 318
Sequences: 919
Seq/Len: 2.90
I_Prob: 0.02

IOJAP - Ribosomal silencing factor RsfS
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: IOJAP
NADD - Nicotinate-nucleotide adenylyltransferase
Paralog alert: 0.03 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: NADD
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
100_L 20_L 1.10 0.02
80_V 207_N 1.01 0.02
92_E 15_V 0.92 0.01
63_G 194_C 0.89 0.01
101_E 192_E 0.85 0.01
35_D 88_T 0.85 0.01
19_G 86_A 0.82 0.01
19_G 96_Q 0.82 0.01
23_I 123_I 0.81 0.01
38_I 113_T 0.80 0.01
27_V 26_L 0.79 0.01
36_C 116_T 0.77 0.01
40_C 42_V 0.77 0.01
73_N 5_Q 0.77 0.01
40_C 13_D 0.77 0.01
48_V 181_A 0.76 0.01
89_V 142_A 0.76 0.01
44_S 73_D 0.76 0.01
101_E 30_I 0.76 0.01
99_E 184_I 0.74 0.01
83_G 194_C 0.73 0.01
49_M 29_L 0.72 0.01
70_E 6_A 0.71 0.01
94_S 137_Y 0.71 0.01
43_T 184_I 0.71 0.01
96_R 191_G 0.71 0.01
39_I 43_P 0.71 0.01
24_A 98_P 0.70 0.01
86_I 23_V 0.70 0.01
55_V 87_Q 0.69 0.01
59_S 73_D 0.69 0.01
47_H 34_R 0.69 0.01
39_I 192_E 0.69 0.01
60_R 18_G 0.69 0.01
67_L 5_Q 0.68 0.01
102_K 40_N 0.67 0.01
96_R 5_Q 0.67 0.01
44_S 45_H 0.67 0.01
22_I 100_V 0.67 0.01
38_I 208_Q 0.67 0.01
26_D 74_E 0.66 0.01
16_D 136_G 0.66 0.01
97_L 210_G 0.66 0.01
87_V 95_E 0.66 0.01
90_M 167_G 0.66 0.01
75_A 123_I 0.65 0.01
14_I 131_V 0.65 0.01
39_I 118_Y 0.65 0.01
99_E 6_A 0.65 0.01
44_S 120_Y 0.65 0.01
103_L 197_L 0.65 0.01
42_G 161_L 0.64 0.01
85_V 98_P 0.64 0.01
103_L 177_F 0.64 0.01
53_D 44_P 0.64 0.01
101_E 210_G 0.64 0.01
89_V 11_T 0.64 0.01
9_F 203_L 0.64 0.01
70_E 32_L 0.64 0.01
19_G 167_G 0.63 0.01
97_L 113_T 0.63 0.01
89_V 91_E 0.63 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 1.1788 seconds.