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OPENSEQ.org

THIO - YPJD
UniProt: P0AA25 - P64432
Length: 372
Sequences: 291
Seq/Len: 0.83
I_Prob: 0.00

THIO - Thioredoxin-1
Paralog alert: 0.85 [within 20: 0.11] - ratio of genomes with paralogs
Cluster includes: THIO2 THIO
YPJD - Inner membrane protein YpjD
Paralog alert: 0.18 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: YPJD
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
45_E 150_W 1.23 0.00
81_L 233_R 1.18 0.00
46_I 236_R 1.15 0.00
24_I 213_S 1.14 0.00
92_V 156_K 1.10 0.00
61_I 120_A 1.09 0.00
56_V 226_G 1.08 0.00
44_D 246_V 1.06 0.00
76_I 248_L 1.06 0.00
49_E 46_A 1.05 0.00
60_N 45_H 1.05 0.00
91_K 252_Y 0.99 0.00
30_A 185_V 0.98 0.00
41_P 215_V 0.98 0.00
60_N 141_A 0.97 0.00
95_L 126_V 0.96 0.00
90_T 252_Y 0.96 0.00
41_P 234_G 0.96 0.00
65_P 140_I 0.96 0.00
48_D 82_I 0.95 0.00
41_P 131_S 0.94 0.00
31_E 93_L 0.93 0.00
31_E 142_A 0.93 0.00
90_T 187_L 0.92 0.00
98_G 215_V 0.91 0.00
32_W 169_L 0.91 0.00
85_G 188_T 0.91 0.00
84_N 140_I 0.90 0.00
106_A 139_I 0.90 0.00
109_A 164_Q 0.89 0.00
109_A 110_M 0.88 0.00
57_A 215_V 0.88 0.00
107_N 186_L 0.88 0.00
21_D 246_V 0.87 0.00
72_G 134_S 0.87 0.00
107_N 244_G 0.87 0.00
104_L 75_M 0.87 0.00
60_N 43_V 0.86 0.00
90_T 91_L 0.86 0.00
76_I 236_R 0.86 0.00
54_L 99_F 0.85 0.00
75_G 211_V 0.85 0.00
80_L 95_I 0.84 0.00
87_V 105_A 0.84 0.00
65_P 37_S 0.84 0.00
93_G 183_G 0.84 0.00
60_N 259_Q 0.84 0.00
105_D 246_V 0.83 0.00
22_G 177_F 0.83 0.00
85_G 212_L 0.83 0.00
24_I 224_L 0.83 0.00
44_D 254_G 0.83 0.00
56_V 170_M 0.82 0.00
98_G 102_I 0.82 0.00
76_I 165_E 0.82 0.00
30_A 248_L 0.81 0.00
47_A 95_I 0.81 0.00
83_K 156_K 0.81 0.00
61_I 105_A 0.80 0.00
28_F 45_H 0.80 0.00
64_N 151_I 0.80 0.00
34_G 78_T 0.80 0.00
30_A 173_E 0.80 0.00
72_G 83_V 0.80 0.00
90_T 190_T 0.79 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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