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OPENSEQ.org

LPTB - LPTC
UniProt: P0A9V1 - P0ADV9
Length: 432
Sequences: 354
Seq/Len: 0.84
I_Prob: 0.00

LPTB - Lipopolysaccharide export system ATP-binding protein LptB
Paralog alert: 0.94 [within 20: 0.84] - ratio of genomes with paralogs
Cluster includes: ARTP BTUD CCMA CYSA DDPD DDPF DPPD DPPF FBPC FECE FEPC FHUC FTSE GLNQ GLTL HISP LIVF LIVG LOLD LPTB MALK METN MLAF MODC NIKD NIKE OPPD OPPF PHNC PHNK PHNL POTA POTG PROV PSTB SAPD SAPF SSUB SUFC TAUB THIQ UGPC YADG YBBA YBBL YCJV YDCT YECC YEHX YHDZ YNJD ZNUC
LPTC - Lipopolysaccharide export system protein LptC
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: LPTC
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
224_I 17_L 1.25 0.00
26_V 70_Y 1.23 0.00
26_V 65_Q 1.19 0.00
23_S 52_Y 1.15 0.00
216_I 94_W 1.10 0.00
49_V 149_V 1.08 0.00
180_I 96_V 1.06 0.00
203_V 62_L 1.06 0.00
54_P 101_A 1.05 0.00
135_G 167_L 1.02 0.00
202_A 138_L 1.00 0.00
172_S 165_G 0.98 0.00
89_I 180_T 0.98 0.00
26_V 153_G 0.98 0.00
135_G 165_G 0.97 0.00
130_L 68_E 0.96 0.00
188_L 138_L 0.94 0.00
67_I 124_S 0.94 0.00
63_D 146_E 0.94 0.00
216_I 167_L 0.92 0.00
66_D 98_A 0.92 0.00
225_L 94_W 0.92 0.00
222_T 63_I 0.92 0.00
45_T 138_L 0.90 0.00
10_A 178_V 0.89 0.00
49_V 65_Q 0.89 0.00
12_A 134_A 0.88 0.00
12_A 40_P 0.87 0.00
102_V 160_G 0.87 0.00
137_S 144_T 0.87 0.00
225_L 167_L 0.87 0.00
172_S 167_L 0.86 0.00
117_R 42_Y 0.86 0.00
96_Y 101_A 0.85 0.00
184_R 64_A 0.85 0.00
202_A 52_Y 0.85 0.00
210_V 167_L 0.83 0.00
212_Q 163_M 0.83 0.00
182_H 94_W 0.83 0.00
224_I 117_V 0.82 0.00
109_L 53_N 0.82 0.00
60_I 142_D 0.81 0.00
119_N 18_V 0.81 0.00
180_I 173_E 0.80 0.00
131_R 146_E 0.80 0.00
179_I 81_P 0.80 0.00
45_T 107_R 0.79 0.00
174_I 172_A 0.79 0.00
223_E 85_T 0.79 0.00
99_L 161_L 0.79 0.00
216_I 153_G 0.79 0.00
28_S 64_A 0.78 0.00
188_L 127_R 0.78 0.00
154_A 153_G 0.77 0.00
8_N 117_V 0.77 0.00
20_E 93_T 0.76 0.00
24_L 81_P 0.76 0.00
224_I 6_R 0.76 0.00
122_M 162_K 0.76 0.00
68_S 184_I 0.76 0.00
55_R 166_N 0.76 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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