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OPENSEQ.org

SERA - SERC
UniProt: P0A9T0 - P23721
Length: 772
Sequences: 510
Seq/Len: 0.68
I_Prob: 0.00

SERA - D-3-phosphoglycerate dehydrogenase
Paralog alert: 0.34 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: GHRA GHRB LDHD SERA
SERC - Phosphoserine aminotransferase
Paralog alert: 0.94 [within 20: 0.15] - ratio of genomes with paralogs
Cluster includes: AAT ALAA ALAC ARNB AVTA CSDA HIS8 ISCS MALY RFFA SERC SUFS TYRB YBDL YDCR YJIR
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
79_I 60_L 1.29 0.00
223_A 307_S 1.21 0.00
149_A 183_P 1.17 0.00
70_I 186_V 1.13 0.00
245_D 307_S 1.12 0.00
225_E 314_L 1.11 0.00
120_L 347_V 1.10 0.00
149_A 118_V 1.10 0.00
248_A 263_A 1.05 0.00
393_A 210_V 1.05 0.00
215_P 149_C 1.02 0.00
191_A 1_M 1.02 0.00
251_D 264_E 1.02 0.00
79_I 228_Y 1.00 0.00
312_L 146_M 1.00 0.00
89_V 63_V 0.99 0.00
65_L 146_M 0.98 0.00
95_A 15_P 0.97 0.00
343_I 2_A 0.96 0.00
15_L 322_L 0.96 0.00
12_K 280_I 0.96 0.00
208_S 19_L 0.93 0.00
27_L 186_V 0.93 0.00
95_A 251_L 0.91 0.00
368_Q 190_G 0.91 0.00
234_L 12_A 0.90 0.00
79_I 257_K 0.90 0.00
207_V 320_A 0.90 0.00
156_I 49_V 0.89 0.00
80_G 324_A 0.88 0.00
156_I 286_Y 0.88 0.00
209_L 57_F 0.87 0.00
351_L 155_D 0.87 0.00
166_L 300_V 0.87 0.00
226_I 300_V 0.87 0.00
170_A 315_E 0.86 0.00
236_I 347_V 0.86 0.00
97_R 321_G 0.85 0.00
75_K 308_A 0.85 0.00
115_L 110_A 0.85 0.00
229_M 314_L 0.85 0.00
351_L 149_C 0.85 0.00
80_G 280_I 0.85 0.00
142_L 46_F 0.85 0.00
127_V 287_R 0.85 0.00
156_I 53_A 0.84 0.00
24_L 69_V 0.84 0.00
211_V 286_Y 0.84 0.00
151_G 340_N 0.83 0.00
167_G 6_N 0.83 0.00
202_N 354_M 0.83 0.00
143_A 56_D 0.83 0.00
96_K 355_V 0.83 0.00
120_L 287_R 0.83 0.00
244_V 242_P 0.83 0.00
223_A 351_T 0.83 0.00
327_F 185_D 0.82 0.00
120_L 257_K 0.82 0.00
144_A 77_R 0.82 0.00
279_S 203_A 0.81 0.00
213_E 63_V 0.81 0.00
97_R 93_T 0.81 0.00
162_I 146_M 0.80 0.00
398_K 359_R 0.80 0.00
20_H 82_A 0.80 0.00
236_I 58_R 0.80 0.00
391_E 359_R 0.80 0.00
251_D 355_V 0.80 0.00
156_I 187_S 0.80 0.00
93_A 361_H 0.79 0.00
76_L 271_Q 0.79 0.00
392_K 2_A 0.79 0.00
79_I 20_K 0.79 0.00
12_K 267_K 0.79 0.00
95_A 286_Y 0.78 0.00
368_Q 351_T 0.77 0.00
127_V 303_Q 0.77 0.00
131_N 44_K 0.77 0.00
380_V 267_K 0.77 0.00
380_V 253_F 0.77 0.00
56_F 317_S 0.76 0.00
156_I 279_V 0.76 0.00
169_L 77_R 0.76 0.00
79_I 48_Q 0.76 0.00
209_L 344_L 0.76 0.00
44_D 43_G 0.75 0.00
241_G 253_F 0.75 0.00
118_G 46_F 0.75 0.00
409_L 256_L 0.75 0.00
79_I 317_S 0.75 0.00
129_E 15_P 0.75 0.00
290_T 231_L 0.74 0.00
374_A 227_D 0.74 0.00
66_T 146_M 0.74 0.00
359_A 264_E 0.74 0.00
362_G 306_D 0.74 0.00
305_G 132_K 0.74 0.00
357_I 307_S 0.74 0.00
99_I 62_N 0.73 0.00
104_A 101_Y 0.73 0.00
397_M 359_R 0.73 0.00
289_L 347_V 0.73 0.00
253_L 93_T 0.73 0.00
223_A 62_N 0.73 0.00
120_L 104_A 0.73 0.00
198_S 221_A 0.73 0.00
79_I 336_A 0.73 0.00
338_R 2_A 0.73 0.00
59_L 69_V 0.73 0.00
344_H 286_Y 0.73 0.00
255_S 263_A 0.72 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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